Index

A

abstract (genui.compounds.extensions.fileimports.model.FileCompounds.Meta attribute) (genui.models.models.CV.Meta attribute) (genui.models.models.ImportableModelComponent.Meta attribute) (genui.models.models.ValidationSet.Meta attribute) (genui.projects.models.BaseDataSet.Meta attribute) (genui.projects.models.BaseProject.Meta attribute) (genui.projects.models.DataSet.Meta attribute) (genui.projects.models.PolymorphicAbstractModel.Meta attribute) AccountsConfig (class in genui.accounts.apps) activities (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.Molecule attribute) (genui.compounds.models.MolSet attribute) activities() (genui.compounds.views.ActivitySetViewSet method) (genui.compounds.views.MoleculeViewSet method) activitiesProp (genui.compounds.extensions.sdf.models.SDFCompounds attribute) Activity (class in genui.compounds.models) Activity.DoesNotExist Activity.MultipleObjectsReturned activity_ptr (genui.compounds.extensions.chembl.models.ChEMBLActivity attribute) (genui.qsar.models.ModelActivity attribute) activity_ptr_id (genui.compounds.extensions.chembl.models.ChEMBLActivity attribute) (genui.qsar.models.ModelActivity attribute) activity_set (genui.compounds.models.ActivityTypes attribute) (genui.compounds.models.ActivityUnits attribute) activityCol (genui.compounds.extensions.csvimports.models.CSVCompounds attribute) ActivityPagination (class in genui.compounds.views) ActivitySerializer (class in genui.compounds.serializers) ActivitySerializer.Meta (class in genui.compounds.serializers) ActivitySet (class in genui.compounds.models) activitySet (genui.qsar.models.QSARTrainingStrategy attribute) ActivitySet.ActivitySetSummary (class in genui.compounds.models) ActivitySet.ActivityTypeSummary (class in genui.compounds.models) ActivitySet.DoesNotExist ActivitySet.MultipleObjectsReturned activitySet_id (genui.qsar.models.QSARTrainingStrategy attribute) activityset_ptr (genui.compounds.extensions.chembl.models.ChEMBLActivities attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironmentScores attribute) (genui.qsar.models.ModelActivitySet attribute) activityset_ptr_id (genui.compounds.extensions.chembl.models.ChEMBLActivities attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironmentScores attribute) (genui.qsar.models.ModelActivitySet attribute) activityset_set (genui.projects.models.Project attribute) ActivitySetAdmin (class in genui.compounds.admin) ActivitySetSerializer (class in genui.compounds.serializers) ActivitySetSerializer.Meta (class in genui.compounds.serializers) ActivitySetSummarySerializer (class in genui.compounds.serializers) ActivitySetViewSet (class in genui.compounds.views) activityThreshold (genui.qsar.models.QSARTrainingStrategy attribute) activityType (genui.qsar.models.QSARTrainingStrategy attribute) activityType_id (genui.qsar.models.QSARTrainingStrategy attribute) activityTypeCol (genui.compounds.extensions.csvimports.models.CSVCompounds attribute)

ActivityTypes (class in genui.compounds.models) ActivityTypes.DoesNotExist ActivityTypes.MultipleObjectsReturned ActivityTypeSerializer (class in genui.compounds.serializers) ActivityTypeSerializer.Meta (class in genui.compounds.serializers) activityTypesProp (genui.compounds.extensions.sdf.models.SDFCompounds attribute) ActivityTypeSummary (class in genui.compounds.serializers) ActivityUnits (class in genui.compounds.models) ActivityUnits.DoesNotExist ActivityUnits.MultipleObjectsReturned activityUnitsCol (genui.compounds.extensions.csvimports.models.CSVCompounds attribute) activityUnitsProp (genui.compounds.extensions.sdf.models.SDFCompounds attribute) ActivityUnitsSerializer (class in genui.compounds.serializers) ActivityUnitsSerializer.Meta (class in genui.compounds.serializers) add_user_to_users_group() (in module genui.projects.signals) addMoleculeFromSMILES() (genui.compounds.initializers.base.MolSetInitializer method) agent (genui.generators.extensions.genuidrugex.models.DrugEx attribute) agent_id (genui.generators.extensions.genuidrugex.models.DrugEx attribute) Algorithm (class in genui.models.genuimodels.bases) (class in genui.models.models) algorithm (genui.models.models.ModelParameter attribute) (genui.models.models.TrainingStrategy attribute) Algorithm.DoesNotExist Algorithm.MultipleObjectsReturned algorithm_id (genui.models.models.ModelParameter attribute) (genui.models.models.TrainingStrategy attribute) algorithm_set (genui.models.models.AlgorithmMode attribute) (genui.models.models.ModelFileFormat attribute) AlgorithmMode (class in genui.models.models) AlgorithmMode.DoesNotExist AlgorithmMode.MultipleObjectsReturned AlgorithmModeSerializer (class in genui.models.serializers) AlgorithmModeSerializer.Meta (class in genui.models.serializers) algorithms (genui.generators.extensions.genuidrugex.genuimodels.metrics.MeanDrExDesirability attribute) (genui.generators.extensions.genuidrugex.genuimodels.metrics.SMILESUniqueRate attribute) AlgorithmSerializer (class in genui.models.serializers) AlgorithmSerializer.Meta (class in genui.models.serializers) AlgorithmViewSet (class in genui.models.views) all_() (in module genui.apps) allocate() (in module genui.utils.gpu) allSmiles (genui.compounds.models.MolSet property) asJSON() (genui.utils.exceptions.GenUIExceptionMixIn method) assay (genui.compounds.extensions.chembl.models.ChEMBLActivity attribute) assay_id (genui.compounds.extensions.chembl.models.ChEMBLActivity attribute) assayID (genui.compounds.extensions.chembl.models.ChEMBLAssay attribute) attachActivities() (genui.compounds.exporters.base.BaseMolSetExporter method) attachMetadata() (genui.compounds.exporters.base.BaseMolSetExporter method) attachModesToModel() (genui.models.genuimodels.bases.Algorithm class method) attachToInstance() (genui.models.genuimodels.bases.Algorithm static method) auc (genui.models.models.ROCCurvePoint attribute) auc_id (genui.models.models.ROCCurvePoint attribute) AUXILIARY (genui.models.models.ModelFile attribute)

B

BaseDataSet (class in genui.projects.models) BaseDataSet.Meta (class in genui.projects.models) BaseMolSetExporter (class in genui.compounds.exporters.base) BaseMolSetViewSet (class in genui.compounds.views) BaseMolSetViewSet.Schema (class in genui.compounds.views) basename (genui.compounds.extensions.chembl.views.ChEMBLAssayViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLSetViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLTargetViewSet attribute) (genui.compounds.extensions.csvimports.views.CSVSetViewSet attribute) (genui.compounds.extensions.generated.views.GeneratedSetViewSet attribute) (genui.compounds.extensions.sdf.views.SDFSetViewSet attribute) (genui.compounds.views.ActivitySetViewSet attribute) (genui.compounds.views.MoleculeViewSet attribute) (genui.compounds.views.MolSetExporterViewSet attribute) (genui.compounds.views.MolSetExportViewSet attribute) (genui.compounds.views.MolSetViewSet attribute) (genui.generators.extensions.genuidrugex.views.ClippedViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExAgentViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExNetViewSet attribute) (genui.generators.extensions.genuidrugex.views.EnvironmentViewSet attribute) (genui.generators.extensions.genuidrugex.views.GeneratorViewSet attribute) (genui.generators.extensions.genuidrugex.views.HumpViewSet attribute) (genui.generators.extensions.genuidrugex.views.ModifierViewSet attribute) (genui.generators.extensions.genuidrugex.views.PropertyScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.QSARScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScoringMethodViewSet attribute) (genui.generators.views.GeneratorAlgorithmViewSet attribute) (genui.generators.views.GeneratorMetricsViewSet attribute) (genui.generators.views.GeneratorViewSet attribute) (genui.maps.views.MappingAlgViewSet attribute) (genui.maps.views.MapViewSet attribute) (genui.projects.views.GenUIProjectViewSet attribute) (genui.qsar.views.DescriptorGroupsViewSet attribute) (genui.qsar.views.QSARAlgorithmViewSet attribute) (genui.qsar.views.QSARMetricsViewSet attribute) (genui.qsar.views.QSARModelViewSet attribute)

BaseProject (class in genui.projects.models) BaseProject.Meta (class in genui.projects.models) BasicQSARModelBuilder (class in genui.qsar.genuimodels.builders) BasicValidationStrategy (class in genui.models.models) basicvalidationstrategy (genui.models.models.ValidationStrategy attribute) BasicValidationStrategy.DoesNotExist BasicValidationStrategy.MultipleObjectsReturned BasicValidationStrategyInitSerializer (class in genui.models.serializers) BasicValidationStrategyInitSerializer.Meta (class in genui.models.serializers) BasicValidationStrategySerializer (class in genui.models.serializers) BOOL (genui.models.models.ModelParameter attribute) build() (genui.generators.extensions.genuidrugex.genuimodels.builders.DrugExNetBuilder method) (genui.maps.genuimodels.builders.MapBuilder method) (genui.models.genuimodels.bases.ModelBuilder method) (genui.qsar.genuimodels.builders.BasicQSARModelBuilder method) build_task (genui.generators.extensions.genuidrugex.views.DrugExAgentViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExNetViewSet attribute) (genui.maps.views.MapViewSet attribute) (genui.models.views.BuildMixIn attribute) (genui.qsar.views.QSARModelViewSet attribute) builder (genui.models.genuimodels.bases.Algorithm property) (genui.models.models.Model attribute) builder_class (genui.generators.extensions.genuidrugex.views.DrugExAgentViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExNetViewSet attribute) (genui.maps.views.MapViewSet attribute) (genui.models.views.BuildMixIn attribute) (genui.qsar.views.QSARModelViewSet attribute) builder_id (genui.models.models.Model attribute) BuildMixIn (class in genui.models.views)

C

calculate() (genui.generators.extensions.genuidrugex.views.EnvironmentViewSet method) calculateDescriptors() (genui.qsar.genuimodels.bases.DescriptorBuilderMixIn method) calculation_serializer_class (genui.generators.extensions.genuidrugex.views.EnvironmentViewSet attribute) canonicalSMILES (genui.compounds.models.ChemicalEntity attribute) (genui.compounds.models.Molecule property) check_availability() (in module genui.utils.gpu) checkInitCondition() (in module genui.utils.init) ChEMBLActivities (class in genui.compounds.extensions.chembl.models) chemblactivities (genui.compounds.models.ActivitySet attribute) ChEMBLActivities.ChEMBLActivitySetSummary (class in genui.compounds.extensions.chembl.models) ChEMBLActivities.DoesNotExist ChEMBLActivities.MultipleObjectsReturned ChEMBLActivitiesAdmin (class in genui.compounds.extensions.chembl.admin) ChEMBLActivity (class in genui.compounds.extensions.chembl.models) chemblactivity (genui.compounds.models.Activity attribute) ChEMBLActivity.DoesNotExist ChEMBLActivity.MultipleObjectsReturned chemblactivity_set (genui.compounds.extensions.chembl.models.ChEMBLAssay attribute) (genui.compounds.extensions.chembl.models.ChEMBLTarget attribute) ChEMBLAssay (class in genui.compounds.extensions.chembl.models) ChEMBLAssay.DoesNotExist ChEMBLAssay.MultipleObjectsReturned ChEMBLAssaySerializer (class in genui.compounds.extensions.chembl.serializers) ChEMBLAssaySerializer.Meta (class in genui.compounds.extensions.chembl.serializers) ChEMBLAssayViewSet (class in genui.compounds.extensions.chembl.views) ChEMBLCompounds (class in genui.compounds.extensions.chembl.models) chemblcompounds (genui.compounds.models.MolSet attribute) ChEMBLCompounds.DoesNotExist ChEMBLCompounds.MultipleObjectsReturned chemblcompounds_set (genui.compounds.extensions.chembl.models.ChEMBLTarget attribute) ChEMBLCompoundsAdmin (class in genui.compounds.extensions.chembl.admin) (class in genui.compounds.extensions.generated.admin) ChemblConfig (class in genui.compounds.extensions.chembl.apps) chemblID (genui.compounds.extensions.chembl.models.ChEMBLMolecule attribute) ChEMBLMolecule (class in genui.compounds.extensions.chembl.models) chemblmolecule (genui.compounds.models.Molecule attribute) ChEMBLMolecule.DoesNotExist ChEMBLMolecule.MultipleObjectsReturned ChEMBLMolSetTestCase (class in genui.compounds.extensions.chembl.tests) ChEMBLSetInitializer (class in genui.compounds.extensions.chembl.initializers) ChEMBLSetInitSerializer (class in genui.compounds.extensions.chembl.serializers) ChEMBLSetInitSerializer.Meta (class in genui.compounds.extensions.chembl.serializers) ChEMBLSetSerializer (class in genui.compounds.extensions.chembl.serializers) ChEMBLSetSerializer.Meta (class in genui.compounds.extensions.chembl.serializers) ChEMBLSetUpdateSerializer (class in genui.compounds.extensions.chembl.serializers) ChEMBLSetUpdateSerializer.Meta (class in genui.compounds.extensions.chembl.serializers) ChEMBLSetViewSet (class in genui.compounds.extensions.chembl.views) ChEMBLStandardizer (class in genui.compounds.initializers.base) ChEMBLTarget (class in genui.compounds.extensions.chembl.models) ChEMBLTarget.DoesNotExist ChEMBLTarget.MultipleObjectsReturned ChEMBLTargetSerializer (class in genui.compounds.extensions.chembl.serializers) ChEMBLTargetSerializer.Meta (class in genui.compounds.extensions.chembl.serializers) ChEMBLTargetViewSet (class in genui.compounds.extensions.chembl.views) ChemicalEntity (class in genui.compounds.models) ChemicalEntity.DoesNotExist ChemicalEntity.MultipleObjectsReturned chemspaceJSON (genui.maps.models.Map property) children (genui.compounds.models.Activity attribute) CLASSIFICATION (genui.models.genuimodels.bases.Algorithm attribute) className (genui.utils.serializers.GenericModelSerializerMixIn attribute) classPath (genui.compounds.models.MolSetExporter attribute) cleanForModelling() (genui.compounds.extensions.chembl.models.ChEMBLActivities method) (genui.compounds.models.ActivitySet method) cleanup() (in module genui.generators.extensions.genuidrugex.torchutils) ClippedScore (class in genui.generators.extensions.genuidrugex.models) clippedscore (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) ClippedScore.DoesNotExist ClippedScore.MultipleObjectsReturned ClippedSerializer (class in genui.generators.extensions.genuidrugex.serializers) ClippedSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) ClippedViewSet (class in genui.generators.extensions.genuidrugex.views) close() (genui.generators.extensions.genuidrugex.genuimodels.monitors.DrugExMonitor method) colSeparator (genui.compounds.extensions.csvimports.models.CSVCompounds attribute) comment (genui.compounds.extensions.chembl.models.ChEMBLActivity attribute) CompleteBuilder (class in genui.models.genuimodels.bases) CompoundImportException compounds (genui.generators.models.Generator attribute) CompoundsConfig (class in genui.compounds.apps) compoundSets (genui.maps.models.Point property) CompoundsMixIn (class in genui.compounds.tests) CONTENT_TYPES (genui.models.models.ModelParameter attribute) contentType (genui.models.models.ModelParameter attribute) corePackage (genui.generators.extensions.genuidrugex.genuimodels.builders.DrugExBuilder property) (genui.maps.genuimodels.builders.MapBuilder property) (genui.models.genuimodels.bases.ModelBuilder property) (genui.models.models.Algorithm attribute) (genui.models.models.ImportableModelComponent attribute) (genui.models.models.ModelBuilder attribute) (genui.models.models.ModelPerformanceMetric attribute) (genui.qsar.models.DescriptorGroup attribute)

CORPUS_FILE_TRAIN_NOTE (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) CORPUS_FILE_VALID_NOTE (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) corpusFileTest (genui.generators.extensions.genuidrugex.models.DrugExNet property) corpusFileTrain (genui.generators.extensions.genuidrugex.models.DrugExNet property) corpusTest (genui.generators.extensions.genuidrugex.models.DrugExNet property) corpusTrain (genui.generators.extensions.genuidrugex.models.DrugExNet property) create() (genui.compounds.extensions.chembl.serializers.ChEMBLSetInitSerializer method) (genui.compounds.extensions.fileimports.serializer.FileSetSerializer method) (genui.compounds.extensions.generated.serializers.GeneratedSetInitSerializer method) (genui.compounds.models.Molecule class method) (genui.compounds.models.MolSetFile static method) (genui.compounds.serializers.MolSetExportSerializer method) (genui.compounds.serializers.MolSetFileSerializer method) (genui.compounds.views.BaseMolSetViewSet method) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentInitSerializer method) (genui.generators.extensions.genuidrugex.serializers.DrugExNetInitSerializer method) (genui.maps.serializers.MapInitSerializer method) (genui.models.models.ModelFile static method) (genui.models.serializers.ModelFileSerializer method) (genui.models.serializers.ModelSerializer method) (genui.models.views.ModelFileView method) (genui.models.views.ModelViewSet method) (genui.projects.serializers.ProjectSerializer method) (genui.qsar.serializers.QSARModelInitSerializer method) createChemicalEntity() (genui.compounds.initializers.base.MolSetInitializer method) createCorpusFile() (genui.generators.extensions.genuidrugex.models.DrugExNet method) created (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.MolSet attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) (genui.generators.models.Generator attribute) (genui.models.models.Model attribute) (genui.projects.models.BaseDataSet attribute) (genui.projects.models.BaseProject attribute) (genui.projects.models.DataSet attribute) (genui.projects.models.Project attribute) createDefaultModels() (in module genui.models.helpers) createDrugExAgent() (genui.generators.extensions.genuidrugex.tests.SetUpDrugExGeneratorsMixIn method) createDrugExNet() (genui.generators.extensions.genuidrugex.tests.SetUpDrugExGeneratorsMixIn method) createGeneratedMolSet() (genui.generators.extensions.genuidrugex.tests.SetUpDrugExGeneratorsMixIn method) createGenerator() (genui.generators.extensions.genuidrugex.tests.SetUpDrugExGeneratorsMixIn method) createGroup() (in module genui.utils.init) createModelScorer() (genui.generators.extensions.genuidrugex.tests.SetUpDrugExGeneratorsMixIn method) createMolecule() (genui.compounds.extensions.chembl.initializers.ChEMBLSetInitializer method) (genui.compounds.initializers.base.MolSetInitializer method) createMolSet() (genui.compounds.tests.CompoundsMixIn method) createPic() (in module genui.compounds.helpers) createProject() (genui.projects.tests.ProjectMixIn method) createPropertyScorer() (genui.generators.extensions.genuidrugex.tests.SetUpDrugExGeneratorsMixIn method) createScoreModifier() (genui.generators.extensions.genuidrugex.tests.SetUpDrugExGeneratorsMixIn method) createScorer() (genui.generators.extensions.genuidrugex.tests.SetUpDrugExGeneratorsMixIn method) createTestEnvironment() (genui.generators.extensions.genuidrugex.tests.SetUpDrugExGeneratorsMixIn method) createTestQSARModel() (genui.qsar.tests.QSARModelInit method) createUser() (genui.projects.tests.UserMixIn method) CsrfExemptSessionAuthentication (class in genui.accounts.authentication) CSVCompounds (class in genui.compounds.extensions.csvimports.models) csvcompounds (genui.compounds.models.MolSet attribute) CSVCompounds.DoesNotExist CSVCompounds.MultipleObjectsReturned CsvimportsConfig (class in genui.compounds.extensions.csvimports.apps) CSVMolecule (class in genui.compounds.extensions.csvimports.models) csvmolecule (genui.compounds.models.Molecule attribute) CSVMolecule.DoesNotExist CSVMolecule.MultipleObjectsReturned CSVMolSetTestCase (class in genui.compounds.extensions.csvimports.tests) CSVParser (class in genui.compounds.extensions.csvimports.parser) CSVParsingError CSVSetInitializer (class in genui.compounds.extensions.csvimports.initializer) CSVSetSerializer (class in genui.compounds.extensions.csvimports.serializers) CSVSetSerializer.Meta (class in genui.compounds.extensions.csvimports.serializers) CSVSetUpdateSerializer (class in genui.compounds.extensions.csvimports.serializers) CSVSetUpdateSerializer.Meta (class in genui.compounds.extensions.csvimports.serializers) CSVSetViewSet (class in genui.compounds.extensions.csvimports.views) CV (class in genui.models.models) CV.Meta (class in genui.models.models) cvFolds (genui.models.models.BasicValidationStrategy attribute) (genui.models.models.CV attribute)

D

dataSeparator (genui.compounds.extensions.sdf.models.SDFCompounds attribute) DataSet (class in genui.projects.models) DataSet.Meta (class in genui.projects.models) defaultValue (genui.models.models.ModelParameter attribute) defaultValue_id (genui.models.models.ModelParameter attribute) delete_model_remove_files() (in module genui.models.signals) delete_molset_files() (in module genui.compounds.signals) delete_molset_finish_tasks() (in module genui.compounds.signals) delete_pic_files() (in module genui.compounds.signals) deleteUser() (genui.projects.tests.UserMixIn method) dependencies (genui.compounds.extensions.chembl.migrations.0001_initial.Migration attribute) (genui.compounds.extensions.csvimports.migrations.0001_initial.Migration attribute) (genui.compounds.extensions.csvimports.migrations.0002_auto_20200716_1251.Migration attribute) (genui.compounds.extensions.csvimports.migrations.0003_auto_20200716_1340.Migration attribute) (genui.compounds.extensions.generated.migrations.0001_initial.Migration attribute) (genui.compounds.extensions.sdf.migrations.0001_initial.Migration attribute) (genui.compounds.extensions.sdf.migrations.0002_auto_20200713_1449.Migration attribute) (genui.compounds.extensions.sdf.migrations.0003_auto_20200713_1501.Migration attribute) (genui.compounds.migrations.0001_initial.Migration attribute) (genui.compounds.migrations.0002_auto_20200427_2039.Migration attribute) (genui.compounds.migrations.0003_auto_20200512_0817.Migration attribute) (genui.compounds.migrations.0004_molsetfile.Migration attribute) (genui.compounds.migrations.0005_extract_entity.Migration attribute) (genui.compounds.migrations.0006_auto_20200720_0915.Migration attribute) (genui.compounds.migrations.0007_add_inchi.Migration attribute) (genui.compounds.migrations.0008_auto_20200723_1212.Migration attribute) (genui.compounds.migrations.0009_auto_20200728_1326.Migration attribute) (genui.compounds.migrations.0010_auto_20210428_1426.Migration attribute) (genui.compounds.migrations.0011_alter_activity_polymorphic_ctype_and_more.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0001_initial.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0002_drugexagenttraining_drugexagentvalidation_and_more.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0003_drugexenvironment_created_and_more.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0004_drugexscorer_created_drugexscorer_description_and_more.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0005_drugex_inputfile_drugex_molset_and_more.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0006_alter_drugexenvironment_rewardscheme.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0007_alter_drugexagenttraining_explorer_and_more.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0008_clippedscore_smooth.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0009_smoothhump.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0010_alter_smoothhump_sigma_alter_smoothhump_upper.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0011_alter_drugexenvironment_rewardscheme.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0012_drugexenvironmentscores.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0013_drugexenvironmentscores_modifierson.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0014_alter_drugexagenttraining_explorer.Migration attribute) (genui.generators.migrations.0001_initial.Migration attribute) (genui.generators.migrations.0002_auto_20200503_1825.Migration attribute) (genui.generators.migrations.0003_delete_generatedmolset.Migration attribute) (genui.generators.migrations.0004_alter_generator_polymorphic_ctype.Migration attribute) (genui.maps.migrations.0001_initial.Migration attribute) (genui.maps.migrations.0002_chemspacejson.Migration attribute) (genui.maps.migrations.0003_auto_20200921_0905.Migration attribute) (genui.maps.migrations.0004_auto_20210121_0812.Migration attribute) (genui.models.migrations.0001_initial.Migration attribute) (genui.models.migrations.0002_auto_20200505_0727.Migration attribute) (genui.models.migrations.0003_roccurvepoint.Migration attribute) (genui.models.migrations.0004_algorithm_corepackage.Migration attribute) (genui.models.migrations.0005_auto_20210108_1130.Migration attribute) (genui.models.migrations.0006_alter_model_polymorphic_ctype_and_more.Migration attribute) (genui.projects.migrations.0001_initial.Migration attribute) (genui.projects.migrations.0002_alter_project_polymorphic_ctype.Migration attribute) (genui.qsar.migrations.0001_initial.Migration attribute) (genui.qsar.migrations.0002_descriptorgroup_corepackage.Migration attribute) (genui.qsar.migrations.0003_auto_20210112_0858.Migration attribute) description (genui.compounds.extensions.chembl.views.ChEMBLAssayViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLSetViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLTargetViewSet attribute) (genui.compounds.extensions.csvimports.views.CSVSetViewSet attribute) (genui.compounds.extensions.generated.views.GeneratedSetViewSet attribute) (genui.compounds.extensions.sdf.views.SDFSetViewSet attribute) (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.MolSet attribute) (genui.compounds.models.MolSetExport attribute) (genui.compounds.views.ActivitySetViewSet attribute) (genui.compounds.views.MoleculeViewSet attribute) (genui.compounds.views.MolSetExporterViewSet attribute) (genui.compounds.views.MolSetExportViewSet attribute) (genui.compounds.views.MolSetViewSet attribute) (genui.generators.extensions.genuidrugex.genuimodels.metrics.DrugExLoss attribute) (genui.generators.extensions.genuidrugex.genuimodels.metrics.MeanDrExDesirability attribute) (genui.generators.extensions.genuidrugex.genuimodels.metrics.SMILESErrorRate attribute) (genui.generators.extensions.genuidrugex.genuimodels.metrics.SMILESUniqueRate attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) (genui.generators.extensions.genuidrugex.views.ClippedViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExAgentViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExNetViewSet attribute) (genui.generators.extensions.genuidrugex.views.EnvironmentViewSet attribute) (genui.generators.extensions.genuidrugex.views.GeneratorViewSet attribute) (genui.generators.extensions.genuidrugex.views.HumpViewSet attribute) (genui.generators.extensions.genuidrugex.views.ModifierViewSet attribute) (genui.generators.extensions.genuidrugex.views.PropertyScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.QSARScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScoringMethodViewSet attribute) (genui.generators.models.Generator attribute) (genui.generators.views.GeneratorAlgorithmViewSet attribute) (genui.generators.views.GeneratorMetricsViewSet attribute) (genui.generators.views.GeneratorViewSet attribute) (genui.maps.views.MappingAlgViewSet attribute) (genui.maps.views.MapViewSet attribute) (genui.models.genuimodels.bases.ValidationMetric attribute) (genui.models.genuimodels.metrics.MCC attribute) (genui.models.genuimodels.metrics.MSE attribute) (genui.models.genuimodels.metrics.R2 attribute) (genui.models.genuimodels.metrics.ROC attribute) (genui.models.models.Model attribute) (genui.models.models.ModelFileFormat attribute) (genui.models.models.ModelPerformanceMetric attribute) (genui.projects.models.BaseDataSet attribute) (genui.projects.models.BaseProject attribute) (genui.projects.models.DataSet attribute) (genui.projects.models.Project attribute) (genui.projects.views.GenUIProjectViewSet attribute) (genui.qsar.views.DescriptorGroupsViewSet attribute) (genui.qsar.views.QSARAlgorithmViewSet attribute) (genui.qsar.views.QSARMetricsViewSet attribute) (genui.qsar.views.QSARModelViewSet attribute) DescriptorBuilderMixIn (class in genui.qsar.genuimodels.bases) DescriptorCalculator (class in genui.qsar.genuimodels.bases) DescriptorGroup (class in genui.qsar.models) DescriptorGroup.DoesNotExist DescriptorGroup.MultipleObjectsReturned DescriptorGroupSerializer (class in genui.qsar.serializers) DescriptorGroupSerializer.Meta (class in genui.qsar.serializers) DescriptorGroupsViewSet (class in genui.qsar.views) descriptors (genui.maps.models.MappingStrategy attribute) (genui.qsar.models.QSARTrainingStrategy attribute) deserialize() (genui.models.genuimodels.bases.Algorithm method) detail (genui.compounds.extensions.chembl.views.ChEMBLAssayViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLSetViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLTargetViewSet attribute) (genui.compounds.extensions.csvimports.views.CSVSetViewSet attribute) (genui.compounds.extensions.generated.views.GeneratedSetViewSet attribute) (genui.compounds.extensions.sdf.views.SDFSetViewSet attribute) (genui.compounds.views.ActivitySetViewSet attribute) (genui.compounds.views.MoleculeViewSet attribute) (genui.compounds.views.MolSetExporterViewSet attribute) (genui.compounds.views.MolSetExportViewSet attribute) (genui.compounds.views.MolSetViewSet attribute) (genui.generators.extensions.genuidrugex.views.ClippedViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExAgentViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExNetViewSet attribute) (genui.generators.extensions.genuidrugex.views.EnvironmentViewSet attribute) (genui.generators.extensions.genuidrugex.views.GeneratorViewSet attribute) (genui.generators.extensions.genuidrugex.views.HumpViewSet attribute) (genui.generators.extensions.genuidrugex.views.ModifierViewSet attribute) (genui.generators.extensions.genuidrugex.views.PropertyScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.QSARScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScoringMethodViewSet attribute) (genui.generators.views.GeneratorAlgorithmViewSet attribute) (genui.generators.views.GeneratorMetricsViewSet attribute) (genui.generators.views.GeneratorViewSet attribute) (genui.maps.views.MappingAlgViewSet attribute) (genui.maps.views.MapViewSet attribute) (genui.projects.views.GenUIProjectViewSet attribute) (genui.qsar.views.DescriptorGroupsViewSet attribute) (genui.qsar.views.QSARAlgorithmViewSet attribute) (genui.qsar.views.QSARMetricsViewSet attribute) (genui.qsar.views.QSARModelViewSet attribute)

discover_apps_urls() (in module genui.utils.inspection) discover_extensions() (in module genui.utils.inspection) discover_extensions_urlpatterns() (in module genui.utils.inspection) discoverExporters() (in module genui.compounds.genuisetup) discoverGenuiModels() (in module genui.models.helpers) disover_app_urls_module() (in module genui.utils.inspection) django_file_formats (genui.models.genuimodels.bases.Algorithm attribute) django_model (genui.models.genuimodels.bases.Algorithm attribute) django_modes (genui.models.genuimodels.bases.Algorithm attribute) django_parameters (genui.models.genuimodels.bases.Algorithm attribute) DJANGO_SETTINGS_MODULE DrugEx (class in genui.generators.extensions.genuidrugex.models) drugex (genui.generators.models.Generator attribute) DrugEx.DoesNotExist DrugEx.MultipleObjectsReturned drugex_set (genui.compounds.models.MolSet attribute) DrugExAgent (class in genui.generators.extensions.genuidrugex.genuimodels.algorithms) (class in genui.generators.extensions.genuidrugex.models) drugexagent (genui.models.models.Model attribute) DrugExAgent.DoesNotExist DrugExAgent.MultipleObjectsReturned DrugExAgentAdmin (class in genui.generators.admin) DrugExAgentBuilder (class in genui.generators.extensions.genuidrugex.genuimodels.builders) DrugExAgentInitSerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExAgentInitSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExAgentSerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExAgentSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExAgentTraining (class in genui.generators.extensions.genuidrugex.models) drugexagenttraining (genui.models.models.TrainingStrategy attribute) DrugExAgentTraining.DoesNotExist DrugExAgentTraining.ExplorerClass (class in genui.generators.extensions.genuidrugex.models) DrugExAgentTraining.MultipleObjectsReturned DrugExAgentTrainingStrategyInitSerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExAgentTrainingStrategyInitSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExAgentTrainingStrategySerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExAgentTrainingStrategySerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExAgentValidation (class in genui.generators.extensions.genuidrugex.models) drugexagentvalidation (genui.models.models.ValidationStrategy attribute) DrugExAgentValidation.DoesNotExist DrugExAgentValidation.MultipleObjectsReturned DrugExAgentValidationStrategyInitSerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExAgentValidationStrategyInitSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExAgentValidationStrategySerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExAgentValidationStrategySerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExAgentViewSet (class in genui.generators.extensions.genuidrugex.views) DrugExAlgorithm (class in genui.generators.extensions.genuidrugex.genuimodels.algorithms) DrugExBuilder (class in genui.generators.extensions.genuidrugex.genuimodels.builders) drugexEnviron (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) DrugExEnvironment (class in genui.generators.extensions.genuidrugex.models) DrugExEnvironment.DoesNotExist DrugExEnvironment.MultipleObjectsReturned DrugExEnvironment.RewardScheme (class in genui.generators.extensions.genuidrugex.models) drugexenvironment_set (genui.projects.models.Project attribute) DrugExEnvironmentCalculationSerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExEnvironmentCalculationSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExEnvironmentScores (class in genui.generators.extensions.genuidrugex.models) drugexenvironmentscores (genui.compounds.models.ActivitySet attribute) DrugExEnvironmentScores.DoesNotExist DrugExEnvironmentScores.MultipleObjectsReturned DrugExEnvironmentSerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExEnvironmentSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) drugexExploit (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) drugexExplore (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) DrugExFromFileTestCase (class in genui.generators.extensions.genuidrugex.tests) DrugExGeneratorInitTestCase (class in genui.generators.extensions.genuidrugex.tests) DrugExGeneratorSerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExGeneratorSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExLoss (class in genui.generators.extensions.genuidrugex.genuimodels.metrics) DrugExMonitor (class in genui.generators.extensions.genuidrugex.genuimodels.monitors) DrugExNet (class in genui.generators.extensions.genuidrugex.models) drugexnet (genui.models.models.Model attribute) DrugExNet.DoesNotExist DrugExNet.MultipleObjectsReturned drugexnet_set (genui.compounds.models.MolSet attribute) (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) DrugExNetAdmin (class in genui.generators.admin) DrugExNetBuilder (class in genui.generators.extensions.genuidrugex.genuimodels.builders) DrugExNetInitSerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExNetInitSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExNetSerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExNetSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExNetTraining (class in genui.generators.extensions.genuidrugex.models) drugexnettraining (genui.models.models.TrainingStrategy attribute) DrugExNetTraining.DoesNotExist DrugExNetTraining.ModelClass (class in genui.generators.extensions.genuidrugex.models) DrugExNetTraining.MultipleObjectsReturned DrugExNetTraining.StructureInputType (class in genui.generators.extensions.genuidrugex.models) DrugExNetValidation (class in genui.generators.extensions.genuidrugex.models) drugexnetvalidation (genui.models.models.ValidationStrategy attribute) DrugExNetValidation.DoesNotExist DrugExNetValidation.MultipleObjectsReturned DrugExNetViewSet (class in genui.generators.extensions.genuidrugex.views) DrugExNetwork (class in genui.generators.extensions.genuidrugex.genuimodels.algorithms) DrugExScorer (class in genui.generators.extensions.genuidrugex.models) DrugExScorer.DoesNotExist DrugExScorer.MultipleObjectsReturned drugexscorer_set (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) (genui.projects.models.Project attribute) DrugExScorerSerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExScorerSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExTrainingStrategyInitSerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExTrainingStrategyInitSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExTrainingStrategySerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExTrainingStrategySerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExValidationStrategyInitSerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExValidationStrategyInitSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) DrugExValidationStrategySerializer (class in genui.generators.extensions.genuidrugex.serializers) DrugExValidationStrategySerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) dump_tensors() (in module genui.generators.extensions.genuidrugex.torchutils) DuplicateEntitiesTest (class in genui.compounds.tests) DuplicateEntitiesTest.InitializerWithMultipleEntities (class in genui.compounds.tests)

E

emptyValue (genui.compounds.extensions.csvimports.models.CSVCompounds attribute) enforce_csrf() (genui.accounts.authentication.CsrfExemptSessionAuthentication method) EngstmapsConfig (class in genui.maps.extensions.engstmaps.apps) entity (genui.compounds.models.Molecule attribute) entity_id (genui.compounds.models.Molecule attribute) environment (genui.generators.extensions.genuidrugex.models.DrugExAgent attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironmentScores attribute) (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) environment variable DJANGO_SETTINGS_MODULE POSTGRES_DB POSTGRES_HOST POSTGRES_PASSWORD POSTGRES_USER PYTHONPATH REDIS_HOST REDIS_PASSWORD

environment_id (genui.generators.extensions.genuidrugex.models.DrugExAgent attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironmentScores attribute) (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) EnvironmentViewSet (class in genui.generators.extensions.genuidrugex.views) epoch (genui.models.models.ModelPerfomanceNN attribute) exploitationNet (genui.generators.extensions.genuidrugex.models.DrugExAgent attribute) exploitationNet_id (genui.generators.extensions.genuidrugex.models.DrugExAgent attribute) explorationNet (genui.generators.extensions.genuidrugex.models.DrugExAgent attribute) explorationNet_id (genui.generators.extensions.genuidrugex.models.DrugExAgent attribute) explorer (genui.generators.extensions.genuidrugex.models.DrugExAgentTraining attribute) export (genui.compounds.models.MolSetFile attribute) export_id (genui.compounds.models.MolSetFile attribute) exporter (genui.compounds.models.MolSetExport attribute) exporter_id (genui.compounds.models.MolSetExport attribute) exports (genui.compounds.models.MolSet attribute) extension (genui.compounds.models.PictureFormat attribute) extensions() (in module genui.apps) extraArgs (genui.utils.serializers.GenericModelSerializerMixIn attribute)

F

fields (genui.compounds.extensions.chembl.serializers.ChEMBLAssaySerializer.Meta attribute) (genui.compounds.extensions.chembl.serializers.ChEMBLSetInitSerializer.Meta attribute) (genui.compounds.extensions.chembl.serializers.ChEMBLSetSerializer.Meta attribute) (genui.compounds.extensions.chembl.serializers.ChEMBLSetUpdateSerializer.Meta attribute) (genui.compounds.extensions.chembl.serializers.ChEMBLTargetSerializer.Meta attribute) (genui.compounds.extensions.csvimports.serializers.CSVSetSerializer.Meta attribute) (genui.compounds.extensions.csvimports.serializers.CSVSetUpdateSerializer.Meta attribute) (genui.compounds.extensions.fileimports.serializer.FileSetSerializer.Meta attribute) (genui.compounds.extensions.fileimports.serializer.FileSetUpdateSerializer.Meta attribute) (genui.compounds.extensions.generated.serializers.GeneratedSetInitSerializer.Meta attribute) (genui.compounds.extensions.generated.serializers.GeneratedSetSerializer.Meta attribute) (genui.compounds.extensions.generated.serializers.GeneratedSetUpdateSerializer.Meta attribute) (genui.compounds.extensions.sdf.serializers.SDFSetSerializer.Meta attribute) (genui.compounds.extensions.sdf.serializers.SDFSetUpdateSerializer.Meta attribute) (genui.compounds.serializers.ActivitySerializer.Meta attribute) (genui.compounds.serializers.ActivitySetSerializer.Meta attribute) (genui.compounds.serializers.ActivityTypeSerializer.Meta attribute) (genui.compounds.serializers.ActivityUnitsSerializer.Meta attribute) (genui.compounds.serializers.GenericMolSetSerializer.Meta attribute) (genui.compounds.serializers.MoleculePicSerializer.Meta attribute) (genui.compounds.serializers.MoleculeSerializer.Meta attribute) (genui.compounds.serializers.MolSetExporterSerializer.Meta attribute) (genui.compounds.serializers.MolSetExportSerializer.Meta attribute) (genui.compounds.serializers.MolSetFileSerializer.Meta attribute) (genui.compounds.serializers.MolSetSerializer.Meta attribute) (genui.compounds.serializers.MolSetUpdateSerializer.Meta attribute) (genui.compounds.serializers.PictureFormatSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.ClippedSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentTrainingStrategyInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentTrainingStrategySerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentValidationStrategyInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentValidationStrategySerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExEnvironmentCalculationSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExEnvironmentSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExGeneratorSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExNetInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExNetSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExScorerSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExTrainingStrategyInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExTrainingStrategySerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExValidationStrategyInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExValidationStrategySerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.ModifierSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.ModifierTestSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.PropertyScorerSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.QSARScorerSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.ScoringFunctionSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.SmoothHumpSerializer.Meta attribute) (genui.generators.serializers.GeneratorSerializer.Meta attribute) (genui.maps.serializers.MapInitSerializer.Meta attribute) (genui.maps.serializers.MappingStrategyInitSerializer.Meta attribute) (genui.maps.serializers.MappingStrategySerializer.Meta attribute) (genui.maps.serializers.MapSerializer.Meta attribute) (genui.maps.serializers.PointSerializer.Meta attribute) (genui.models.serializers.AlgorithmModeSerializer.Meta attribute) (genui.models.serializers.AlgorithmSerializer.Meta attribute) (genui.models.serializers.BasicValidationStrategyInitSerializer.Meta attribute) (genui.models.serializers.ModelFileFormatSerializer.Meta attribute) (genui.models.serializers.ModelFileSerializer.Meta attribute) (genui.models.serializers.ModelParameterSerializer.Meta attribute) (genui.models.serializers.ModelParameterValueSerializer.Meta attribute) (genui.models.serializers.ModelPerformanceMetricSerializer.Meta attribute) (genui.models.serializers.ModelPerformanceSerializer.Meta attribute) (genui.models.serializers.ModelSerializer.Meta attribute) (genui.models.serializers.TrainingStrategyInitSerializer.Meta attribute) (genui.models.serializers.TrainingStrategySerializer.Meta attribute) (genui.models.serializers.ValidationStrategyInitSerializer.Meta attribute) (genui.models.serializers.ValidationStrategySerializer.Meta attribute) (genui.projects.serializers.ProjectSerializer.Meta attribute) (genui.qsar.serializers.DescriptorGroupSerializer.Meta attribute) (genui.qsar.serializers.ModelActivitySetSerializer.Meta attribute) (genui.qsar.serializers.QSARModelInitSerializer.Meta attribute) (genui.qsar.serializers.QSARModelSerializer.Meta attribute) (genui.qsar.serializers.QSARTrainingStrategyInitSerializer.Meta attribute) (genui.qsar.serializers.QSARTrainingStrategySerializer.Meta attribute)

file (genui.compounds.extensions.fileimports.model.FileCompounds property) (genui.compounds.models.MolSetFile attribute) (genui.models.models.ModelFile attribute) file_extension (genui.compounds.extensions.csvimports.serializers.CSVSetSerializer.Meta attribute) (genui.compounds.extensions.fileimports.serializer.FileSetSerializer.Meta attribute) (genui.compounds.extensions.sdf.serializers.SDFSetSerializer.Meta attribute) FILE_TYPES (genui.compounds.models.PictureFormat attribute) FileCompounds (class in genui.compounds.extensions.fileimports.model) FileCompounds.Meta (class in genui.compounds.extensions.fileimports.model) fileExtension (genui.models.models.ModelFileFormat attribute) fileFormats (genui.models.models.Algorithm attribute) FileInitializer (class in genui.compounds.extensions.fileimports.initializer) FileParser (class in genui.compounds.extensions.fileimports.parser) files (genui.compounds.models.MolSet attribute) (genui.compounds.models.MolSetExport attribute) (genui.models.models.Model attribute) files() (genui.compounds.views.BaseMolSetViewSet method) FileSetSerializer (class in genui.compounds.extensions.fileimports.serializer) FileSetSerializer.Meta (class in genui.compounds.extensions.fileimports.serializer) FileSetUpdateSerializer (class in genui.compounds.extensions.fileimports.serializer) FileSetUpdateSerializer.Meta (class in genui.compounds.extensions.fileimports.serializer) FilterToModelMixin (class in genui.models.views) FilterToProjectMixIn (class in genui.projects.serializers) FilterToUserMixIn (class in genui.accounts.serializers) findAlgorithmClass() (genui.models.genuimodels.bases.ModelBuilder method) findDescriptorClass() (genui.qsar.genuimodels.bases.DescriptorBuilderMixIn static method) findMetricClass() (genui.models.genuimodels.bases.ModelBuilder method) findSubclassByID() (in module genui.utils.inspection) fingerprint (genui.compounds.models.ChemicalEntity property) (genui.compounds.models.Molecule property) fit() (genui.generators.extensions.genuidrugex.genuimodels.algorithms.DrugExAgent method) (genui.generators.extensions.genuidrugex.genuimodels.algorithms.DrugExNetwork method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.Isomap method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.MDS method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.PCA method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.SVD method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.UMAP method) (genui.maps.genuimodels.algorithms.MapAlgorithm method) (genui.maps.genuimodels.algorithms.TSNE method) (genui.models.genuimodels.algorithms.RandomForest method) (genui.models.genuimodels.bases.Algorithm method) fitAndValidate() (genui.models.genuimodels.bases.ValidationMixIn method) FLOAT (genui.models.models.ModelParameter attribute) fold (genui.models.models.ModelPerformanceCV attribute) format (genui.compounds.models.MoleculePic attribute) (genui.models.models.ModelFile attribute) format_id (genui.compounds.models.MoleculePic attribute) (genui.models.models.ModelFile attribute) fpr (genui.models.models.ROCCurvePoint attribute) frags (genui.generators.extensions.genuidrugex.models.DrugExNetTraining.StructureInputType attribute)

G

generate_inchis() (in module genui.compounds.migrations.0007_add_inchi) generateAuxFileName() (genui.models.models.ModelFile static method) GeneratedConfig (class in genui.compounds.extensions.generated.apps) GeneratedMolSet (class in genui.compounds.extensions.generated.models) generatedmolset (genui.compounds.models.MolSet attribute) GeneratedMolSet.DoesNotExist GeneratedMolSet.MultipleObjectsReturned GeneratedSetInitializer (class in genui.compounds.extensions.generated.initializers) GeneratedSetInitSerializer (class in genui.compounds.extensions.generated.serializers) GeneratedSetInitSerializer.Meta (class in genui.compounds.extensions.generated.serializers) GeneratedSetSerializer (class in genui.compounds.extensions.generated.serializers) GeneratedSetSerializer.Meta (class in genui.compounds.extensions.generated.serializers) GeneratedSetUpdateSerializer (class in genui.compounds.extensions.generated.serializers) GeneratedSetUpdateSerializer.Meta (class in genui.compounds.extensions.generated.serializers) GeneratedSetViewSet (class in genui.compounds.extensions.generated.views) generateMainFileName() (genui.models.models.ModelFile static method) generateTypeSummaries() (genui.compounds.models.ActivitySet.ActivitySetSummary method) Generator (class in genui.generators.models) GENERATOR (genui.models.genuimodels.bases.Algorithm attribute) generator (genui.models.models.Model attribute) Generator.DoesNotExist Generator.MultipleObjectsReturned generator_ptr (genui.generators.extensions.genuidrugex.models.DrugEx attribute) generator_ptr_id (genui.generators.extensions.genuidrugex.models.DrugEx attribute) generator_set (genui.projects.models.Project attribute) GeneratorAdmin (class in genui.generators.admin) GeneratorAlgorithmViewSet (class in genui.generators.views) GeneratorMetricsViewSet (class in genui.generators.views) GeneratorsConfig (class in genui.generators.apps) GeneratorSerializer (class in genui.generators.serializers) GeneratorSerializer.Meta (class in genui.generators.serializers) GeneratorViewSet (class in genui.generators.extensions.genuidrugex.views) (class in genui.generators.views) GenericModelSerializerMixIn (class in genui.utils.serializers) GenericMolSetSerializer (class in genui.compounds.serializers) GenericMolSetSerializer.Meta (class in genui.compounds.serializers) genui module genui.about module genui.accounts module genui.accounts.admin module genui.accounts.apps module genui.accounts.authentication module genui.accounts.extensions module genui.accounts.genuisetup module genui.accounts.migrations module genui.accounts.models module genui.accounts.serializers module genui.accounts.tests module genui.accounts.urls module genui.accounts.views module genui.apps module genui.compounds module genui.compounds.admin module genui.compounds.apps module genui.compounds.exporters module genui.compounds.exporters.base module genui.compounds.extensions module genui.compounds.extensions.chembl module genui.compounds.extensions.chembl.admin module genui.compounds.extensions.chembl.apps module genui.compounds.extensions.chembl.genuisetup module genui.compounds.extensions.chembl.initializers module genui.compounds.extensions.chembl.migrations module genui.compounds.extensions.chembl.migrations.0001_initial module genui.compounds.extensions.chembl.models module genui.compounds.extensions.chembl.serializers module genui.compounds.extensions.chembl.tests module genui.compounds.extensions.chembl.urls module genui.compounds.extensions.chembl.views module genui.compounds.extensions.csvimports module genui.compounds.extensions.csvimports.admin module genui.compounds.extensions.csvimports.apps module genui.compounds.extensions.csvimports.genuisetup module genui.compounds.extensions.csvimports.initializer module genui.compounds.extensions.csvimports.migrations module genui.compounds.extensions.csvimports.migrations.0001_initial module genui.compounds.extensions.csvimports.migrations.0002_auto_20200716_1251 module genui.compounds.extensions.csvimports.migrations.0003_auto_20200716_1340 module genui.compounds.extensions.csvimports.models module genui.compounds.extensions.csvimports.parser module genui.compounds.extensions.csvimports.serializers module genui.compounds.extensions.csvimports.tests module genui.compounds.extensions.csvimports.urls module genui.compounds.extensions.csvimports.views module genui.compounds.extensions.fileimports module genui.compounds.extensions.fileimports.initializer module genui.compounds.extensions.fileimports.model module genui.compounds.extensions.fileimports.parser module genui.compounds.extensions.fileimports.serializer module genui.compounds.extensions.generated module genui.compounds.extensions.generated.admin module genui.compounds.extensions.generated.apps module genui.compounds.extensions.generated.genuisetup module genui.compounds.extensions.generated.initializers module genui.compounds.extensions.generated.migrations module genui.compounds.extensions.generated.migrations.0001_initial module genui.compounds.extensions.generated.models module genui.compounds.extensions.generated.serializers module genui.compounds.extensions.generated.tests module genui.compounds.extensions.generated.urls module genui.compounds.extensions.generated.views module genui.compounds.extensions.sdf module genui.compounds.extensions.sdf.admin module genui.compounds.extensions.sdf.apps module genui.compounds.extensions.sdf.exporters module genui.compounds.extensions.sdf.genuisetup module genui.compounds.extensions.sdf.initializer module genui.compounds.extensions.sdf.migrations module genui.compounds.extensions.sdf.migrations.0001_initial module genui.compounds.extensions.sdf.migrations.0002_auto_20200713_1449 module genui.compounds.extensions.sdf.migrations.0003_auto_20200713_1501 module genui.compounds.extensions.sdf.models module genui.compounds.extensions.sdf.parser module genui.compounds.extensions.sdf.serializers module genui.compounds.extensions.sdf.tests module genui.compounds.extensions.sdf.urls module genui.compounds.extensions.sdf.views module genui.compounds.genuisetup module genui.compounds.helpers module genui.compounds.initializers module genui.compounds.initializers.base module genui.compounds.initializers.exceptions module genui.compounds.migrations module genui.compounds.migrations.0001_initial module genui.compounds.migrations.0002_auto_20200427_2039 module genui.compounds.migrations.0003_auto_20200512_0817 module genui.compounds.migrations.0004_molsetfile module genui.compounds.migrations.0005_extract_entity module genui.compounds.migrations.0006_auto_20200720_0915 module genui.compounds.migrations.0007_add_inchi module genui.compounds.migrations.0008_auto_20200723_1212 module genui.compounds.migrations.0009_auto_20200728_1326 module genui.compounds.migrations.0010_auto_20210428_1426 module genui.compounds.migrations.0011_alter_activity_polymorphic_ctype_and_more module genui.compounds.models module genui.compounds.serializers module genui.compounds.signals module genui.compounds.tasks module genui.compounds.tests module genui.compounds.urls module genui.compounds.views module genui.extensions module genui.generators module genui.generators.admin module genui.generators.apps module genui.generators.extensions module genui.generators.extensions.genuidrugex module genui.generators.extensions.genuidrugex.admin module genui.generators.extensions.genuidrugex.apps module genui.generators.extensions.genuidrugex.genuimodels module genui.generators.extensions.genuidrugex.genuimodels.algorithms module genui.generators.extensions.genuidrugex.genuimodels.builders module genui.generators.extensions.genuidrugex.genuimodels.metrics module genui.generators.extensions.genuidrugex.genuimodels.monitors module genui.generators.extensions.genuidrugex.genuisetup module genui.generators.extensions.genuidrugex.migrations module genui.generators.extensions.genuidrugex.migrations.0001_initial module genui.generators.extensions.genuidrugex.migrations.0002_drugexagenttraining_drugexagentvalidation_and_more module genui.generators.extensions.genuidrugex.migrations.0003_drugexenvironment_created_and_more module genui.generators.extensions.genuidrugex.migrations.0004_drugexscorer_created_drugexscorer_description_and_more module genui.generators.extensions.genuidrugex.migrations.0005_drugex_inputfile_drugex_molset_and_more module genui.generators.extensions.genuidrugex.migrations.0006_alter_drugexenvironment_rewardscheme module genui.generators.extensions.genuidrugex.migrations.0007_alter_drugexagenttraining_explorer_and_more module genui.generators.extensions.genuidrugex.migrations.0008_clippedscore_smooth module genui.generators.extensions.genuidrugex.migrations.0009_smoothhump module genui.generators.extensions.genuidrugex.migrations.0010_alter_smoothhump_sigma_alter_smoothhump_upper module genui.generators.extensions.genuidrugex.migrations.0011_alter_drugexenvironment_rewardscheme module genui.generators.extensions.genuidrugex.migrations.0012_drugexenvironmentscores module genui.generators.extensions.genuidrugex.migrations.0013_drugexenvironmentscores_modifierson module genui.generators.extensions.genuidrugex.migrations.0014_alter_drugexagenttraining_explorer module genui.generators.extensions.genuidrugex.models module genui.generators.extensions.genuidrugex.serializers module genui.generators.extensions.genuidrugex.tasks module genui.generators.extensions.genuidrugex.tests module genui.generators.extensions.genuidrugex.torchutils module genui.generators.extensions.genuidrugex.urls module genui.generators.extensions.genuidrugex.views module genui.generators.genuisetup module genui.generators.migrations module genui.generators.migrations.0001_initial module genui.generators.migrations.0002_auto_20200503_1825 module genui.generators.migrations.0003_delete_generatedmolset module genui.generators.migrations.0004_alter_generator_polymorphic_ctype module genui.generators.models module genui.generators.serializers module genui.generators.signals module genui.generators.urls module genui.generators.views module genui.maps module genui.maps.admin module genui.maps.apps module genui.maps.extensions module genui.maps.extensions.engstmaps module genui.maps.extensions.engstmaps.admin module genui.maps.extensions.engstmaps.apps module genui.maps.extensions.engstmaps.genuimodels module genui.maps.extensions.engstmaps.genuimodels.algorithms module genui.maps.extensions.engstmaps.genuisetup module genui.maps.extensions.engstmaps.migrations module genui.maps.extensions.engstmaps.models module genui.maps.extensions.engstmaps.tests module genui.maps.extensions.engstmaps.views module genui.maps.genuimodels module genui.maps.genuimodels.algorithms module genui.maps.genuimodels.builders module genui.maps.genuisetup module genui.maps.migrations module genui.maps.migrations.0001_initial module genui.maps.migrations.0002_chemspacejson module genui.maps.migrations.0003_auto_20200921_0905 module genui.maps.migrations.0004_auto_20210121_0812 module genui.maps.models module genui.maps.serializers module genui.maps.tasks module genui.maps.tests module

genui.maps.urls module genui.maps.views module genui.models module genui.models.admin module genui.models.apps module genui.models.extensions module genui.models.genuimodels module genui.models.genuimodels.algorithms module genui.models.genuimodels.bases module genui.models.genuimodels.builders module genui.models.genuimodels.metrics module genui.models.genuisetup module genui.models.helpers module genui.models.migrations module genui.models.migrations.0001_initial module genui.models.migrations.0002_auto_20200505_0727 module genui.models.migrations.0003_roccurvepoint module genui.models.migrations.0004_algorithm_corepackage module genui.models.migrations.0005_auto_20210108_1130 module genui.models.migrations.0006_alter_model_polymorphic_ctype_and_more module genui.models.models module genui.models.serializers module genui.models.signals module genui.models.tests module genui.models.urls module genui.models.views module genui.projects module genui.projects.admin module genui.projects.apps module genui.projects.extensions module genui.projects.genuisetup module genui.projects.migrations module genui.projects.migrations.0001_initial module genui.projects.migrations.0002_alter_project_polymorphic_ctype module genui.projects.models module genui.projects.serializers module genui.projects.signals module genui.projects.tasks module genui.projects.tests module genui.projects.urls module genui.projects.views module genui.qsar module genui.qsar.admin module genui.qsar.apps module genui.qsar.extensions module genui.qsar.genuimodels module genui.qsar.genuimodels.bases module genui.qsar.genuimodels.builders module genui.qsar.genuimodels.descriptors module genui.qsar.genuisetup module genui.qsar.migrations module genui.qsar.migrations.0001_initial module genui.qsar.migrations.0002_descriptorgroup_corepackage module genui.qsar.migrations.0003_auto_20210112_0858 module genui.qsar.models module genui.qsar.serializers module genui.qsar.tasks module genui.qsar.tests module genui.qsar.urls module genui.qsar.views module genui.settings module genui.settings.base module genui.settings.celery module genui.settings.databases module genui.settings.databases.debug module genui.settings.debug module genui.settings.genuibase module genui.settings.test module genui.utils module genui.utils.admin module genui.utils.apps module genui.utils.exceptions module genui.utils.extensions module genui.utils.extensions.tasks module genui.utils.extensions.tasks.admin module genui.utils.extensions.tasks.apps module genui.utils.extensions.tasks.genuisetup module genui.utils.extensions.tasks.migrations module genui.utils.extensions.tasks.models module genui.utils.extensions.tasks.progress module genui.utils.extensions.tasks.serializers module genui.utils.extensions.tasks.tasks module genui.utils.extensions.tasks.tests module genui.utils.extensions.tasks.urls module genui.utils.extensions.tasks.utils module genui.utils.extensions.tasks.views module genui.utils.genuisetup module genui.utils.gpu module genui.utils.init module genui.utils.inspection module genui.utils.migrations module genui.utils.models module genui.utils.pagination module genui.utils.serializers module genui.utils.tests module genui.utils.urls module genui.utils.views module genui.wsgi module GenuidrugexConfig (class in genui.generators.extensions.genuidrugex.apps) GenUIException GenUIExceptionMixIn (class in genui.utils.exceptions) GenUIModelScorer (class in genui.generators.extensions.genuidrugex.models) genuimodelscorer (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) GenUIModelScorer.DoesNotExist GenUIModelScorer.ModelScorer (class in genui.generators.extensions.genuidrugex.models) GenUIModelScorer.MultipleObjectsReturned genuimodelscorer_set (genui.qsar.models.QSARModel attribute) GenuiPagination (class in genui.utils.pagination) GenUIProjectAdmin (class in genui.projects.admin) GenUIProjectViewSet (class in genui.projects.views) GenUIWarning get() (genui.compounds.views.MolSetMoleculesView method) (genui.generators.extensions.genuidrugex.models.DrugEx method) (genui.generators.models.Generator method) (genui.utils.extensions.tasks.serializers.TasksSerializerFactory static method) (genui.utils.extensions.tasks.views.ModelTasksView method) (genui.utils.extensions.tasks.views.TaskProgressView method) get_available_name() (genui.utils.models.OverwriteStorage method) get_build_task() (genui.models.views.BuildMixIn method) get_builder_class() (genui.models.views.BuildMixIn method) get_builder_kwargs() (genui.generators.extensions.genuidrugex.views.DrugExAgentViewSet method) (genui.generators.extensions.genuidrugex.views.DrugExNetViewSet method) (genui.models.views.ModelViewSet method) get_contentType_display() (genui.models.models.ModelParameter method) get_defaultValue() (genui.models.serializers.ModelParameterSerializer method) get_explorer_display() (genui.generators.extensions.genuidrugex.models.DrugExAgentTraining method) get_extension_display() (genui.compounds.models.PictureFormat method) get_initializer_additional_arguments() (genui.compounds.extensions.chembl.views.ChEMBLSetViewSet method) (genui.compounds.extensions.csvimports.views.CSVSetViewSet method) (genui.compounds.extensions.generated.views.GeneratedSetViewSet method) (genui.compounds.extensions.sdf.views.SDFSetViewSet method) (genui.compounds.views.BaseMolSetViewSet method) get_initializer_class() (genui.compounds.views.BaseMolSetViewSet method) get_inputType_display() (genui.generators.extensions.genuidrugex.models.DrugExNetTraining method) get_kind_display() (genui.models.models.ModelFile method) get_modelClass_display() (genui.generators.extensions.genuidrugex.models.DrugExNetTraining method) get_next_by_created() (genui.compounds.models.ActivitySet method) (genui.compounds.models.MolSet method) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment method) (genui.generators.extensions.genuidrugex.models.DrugExScorer method) (genui.generators.extensions.genuidrugex.models.ScoreModifier method) (genui.generators.extensions.genuidrugex.models.ScoringMethod method) (genui.generators.models.Generator method) (genui.models.models.Model method) (genui.projects.models.BaseDataSet method) (genui.projects.models.BaseProject method) (genui.projects.models.DataSet method) (genui.projects.models.Project method) get_next_by_updated() (genui.compounds.models.ActivitySet method) (genui.compounds.models.MolSet method) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment method) (genui.generators.extensions.genuidrugex.models.DrugExScorer method) (genui.generators.extensions.genuidrugex.models.ScoreModifier method) (genui.generators.extensions.genuidrugex.models.ScoringMethod method) (genui.generators.models.Generator method) (genui.models.models.Model method) (genui.projects.models.BaseDataSet method) (genui.projects.models.BaseProject method) (genui.projects.models.DataSet method) (genui.projects.models.Project method) get_next_link() (genui.utils.pagination.GenuiPagination method) get_operation() (genui.compounds.serializers.MolSetSerializer.AutoSchemaMixIn method) (genui.utils.extensions.tasks.serializers.TasksSerializerFactory.AutoSchemaMixIn method) get_parent() (genui.generators.extensions.genuidrugex.serializers.DrugExNetSerializer method) get_predict_task() (genui.models.views.PredictMixIn method) get_previous_by_created() (genui.compounds.models.ActivitySet method) (genui.compounds.models.MolSet method) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment method) (genui.generators.extensions.genuidrugex.models.DrugExScorer method) (genui.generators.extensions.genuidrugex.models.ScoreModifier method) (genui.generators.extensions.genuidrugex.models.ScoringMethod method) (genui.generators.models.Generator method) (genui.models.models.Model method) (genui.projects.models.BaseDataSet method) (genui.projects.models.BaseProject method) (genui.projects.models.DataSet method) (genui.projects.models.Project method) get_previous_by_updated() (genui.compounds.models.ActivitySet method) (genui.compounds.models.MolSet method) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment method) (genui.generators.extensions.genuidrugex.models.DrugExScorer method) (genui.generators.extensions.genuidrugex.models.ScoreModifier method) (genui.generators.extensions.genuidrugex.models.ScoringMethod method) (genui.generators.models.Generator method) (genui.models.models.Model method) (genui.projects.models.BaseDataSet method) (genui.projects.models.BaseProject method) (genui.projects.models.DataSet method) (genui.projects.models.Project method) get_previous_link() (genui.utils.pagination.GenuiPagination method) get_prop_display() (genui.generators.extensions.genuidrugex.models.PropertyScorer method) get_properties() (genui.compounds.serializers.MoleculeSerializer method) get_queryset() (genui.accounts.serializers.FilterToUserMixIn method) (genui.compounds.views.MoleculeViewSet method) (genui.generators.views.GeneratorAlgorithmViewSet method) (genui.generators.views.GeneratorMetricsViewSet method) (genui.maps.views.MappingAlgViewSet method) (genui.models.views.FilterToModelMixin method) (genui.projects.serializers.FilterToProjectMixIn method) (genui.qsar.views.QSARAlgorithmViewSet method) (genui.qsar.views.QSARMetricsViewSet method) get_release_info() (in module genui.about) get_rewardScheme_display() (genui.generators.extensions.genuidrugex.models.DrugExEnvironment method) get_serializer_class() (genui.compounds.extensions.chembl.views.ChEMBLSetViewSet method) (genui.compounds.extensions.csvimports.views.CSVSetViewSet method) (genui.compounds.extensions.generated.views.GeneratedSetViewSet method) (genui.compounds.extensions.sdf.views.SDFSetViewSet method) (genui.generators.extensions.genuidrugex.views.EnvironmentViewSet method) (genui.generators.extensions.genuidrugex.views.ModifierViewSet method) (genui.models.views.BuildMixIn method) get_updater_additional_arguments() (genui.compounds.views.BaseMolSetViewSet method) get_updater_class() (genui.compounds.views.BaseMolSetViewSet method) get_url() (genui.utils.pagination.GenuiPagination method) getActivityTypes() (genui.compounds.models.ActivitySet method) getBaseSerializerClass() (genui.utils.serializers.GenericModelSerializerMixIn method) getBuilder() (genui.generators.extensions.genuidrugex.tests.SetUpDrugExGeneratorsMixIn method) getChemSpaceJSDict() (genui.maps.models.Map method) getClassNameRepresentation() (genui.utils.serializers.GenericModelSerializerMixIn method) getCorpus() (genui.generators.extensions.genuidrugex.models.DrugExNet method) getCurve() (genui.models.genuimodels.metrics.ROC method) getData() (genui.compounds.initializers.base.MolSetInitializer.DuplicateChemicalEntityWarning method) (genui.compounds.initializers.exceptions.InconsistentIdentifiersException method) (genui.compounds.initializers.exceptions.SMILESParsingError method) (genui.utils.exceptions.GenUIExceptionMixIn method) getDataSetFromMolset() (genui.generators.extensions.genuidrugex.models.DrugExAgent method) (genui.generators.extensions.genuidrugex.models.DrugExNet method) getDefaultVoc() (genui.generators.extensions.genuidrugex.models.DrugExNet method) getDeserializer() (genui.generators.extensions.genuidrugex.genuimodels.algorithms.DrugExAlgorithm method) (genui.models.genuimodels.bases.Algorithm method) getDjangoModel() (genui.models.genuimodels.bases.Algorithm class method) (genui.models.genuimodels.bases.ModelBuilder class method) (genui.models.genuimodels.bases.ValidationMetric class method) (genui.qsar.genuimodels.bases.DescriptorCalculator class method) getExplorerInstance() (genui.generators.extensions.genuidrugex.models.DrugExAgentTraining method) getExtraFieldsRepresentation() (genui.utils.serializers.GenericModelSerializerMixIn method) getFileFormats() (genui.generators.extensions.genuidrugex.genuimodels.algorithms.DrugExAlgorithm class method) (genui.models.genuimodels.bases.Algorithm class method) getFullName() (in module genui.utils.inspection) getGenerator() (genui.generators.extensions.genuidrugex.models.DrugExAgent method) getInstance() (genui.compounds.initializers.base.MolSetInitializer method) (genui.generators.extensions.genuidrugex.models.ClippedScore method) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment method) (genui.generators.extensions.genuidrugex.models.DrugExScorer method) (genui.generators.extensions.genuidrugex.models.GenUIModelScorer method) (genui.generators.extensions.genuidrugex.models.PropertyScorer method) (genui.generators.extensions.genuidrugex.models.ScoreModifier method) (genui.generators.extensions.genuidrugex.models.ScoringMethod method) (genui.generators.extensions.genuidrugex.models.SmoothHump method) getKey() (genui.generators.extensions.genuidrugex.models.GenUIModelScorer.ModelScorer method) getModel() (genui.generators.extensions.genuidrugex.models.DrugExNet method) getModes() (genui.generators.extensions.genuidrugex.genuimodels.algorithms.DrugExAlgorithm class method) (genui.maps.genuimodels.algorithms.MapAlgorithm class method) (genui.models.genuimodels.bases.Algorithm class method) getObjectAndModuleFromFullName() (in module genui.utils.inspection) getParams() (genui.models.genuimodels.bases.Algorithm class method) getPerformance() (genui.generators.extensions.genuidrugex.tests.SetUpDrugExGeneratorsMixIn method) getPic() (genui.compounds.models.Molecule method) getPoints() (genui.maps.extensions.engstmaps.genuimodels.algorithms.Isomap method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.MDS method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.PCA method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.SVD method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.UMAP method) (genui.maps.genuimodels.algorithms.MapAlgorithm method) (genui.maps.genuimodels.algorithms.TSNE method) (genui.maps.genuimodels.builders.MapBuilder method) getRDMols() (genui.compounds.exporters.base.BaseMolSetExporter method) getScores() (genui.generators.extensions.genuidrugex.models.GenUIModelScorer.ModelScorer method) getSerializer() (genui.generators.extensions.genuidrugex.genuimodels.algorithms.DrugExAlgorithm method) (genui.maps.genuimodels.algorithms.TSNE method) (genui.models.genuimodels.bases.Algorithm method) getSubclasses() (in module genui.utils.inspection) getSubclassesFromModule() (in module genui.utils.inspection) getSummary() (genui.compounds.extensions.chembl.models.ChEMBLActivities method) (genui.compounds.models.ActivitySet method) getTasksAsDict() (genui.utils.extensions.tasks.models.TaskShortcutsMixIn method) getThreshold() (genui.generators.extensions.genuidrugex.models.DrugExScorer method) getTypeInfo() (genui.compounds.extensions.chembl.models.ChEMBLActivities.ChEMBLActivitySetSummary method) (genui.compounds.models.ActivitySet.ActivitySetSummary method) getX() (genui.generators.extensions.genuidrugex.genuimodels.builders.DrugExAgentBuilder method) (genui.generators.extensions.genuidrugex.genuimodels.builders.DrugExNetBuilder method) (genui.maps.genuimodels.builders.MapBuilder method) (genui.models.genuimodels.bases.ModelBuilder method) (genui.qsar.genuimodels.bases.QSARModelBuilder method) getY() (genui.generators.extensions.genuidrugex.genuimodels.builders.DrugExBuilder method) (genui.maps.genuimodels.builders.MapBuilder method) (genui.models.genuimodels.bases.ModelBuilder method) (genui.qsar.genuimodels.bases.QSARModelBuilder method) gpu_support (genui.compounds.extensions.generated.views.GeneratedSetViewSet attribute) (genui.compounds.views.BaseMolSetViewSet attribute) GPUAllocationException GPUTests (class in genui.utils.tests) graph (genui.generators.extensions.genuidrugex.models.DrugExAgentTraining.ExplorerClass attribute) graphTrans (genui.generators.extensions.genuidrugex.models.DrugExNetTraining.ModelClass attribute) group_name (genui.qsar.genuimodels.bases.DescriptorCalculator attribute) (genui.qsar.genuimodels.descriptors.MorganFPCalculator attribute)

H

high (genui.generators.extensions.genuidrugex.models.ClippedScore attribute)

HumpViewSet (class in genui.generators.extensions.genuidrugex.views)

I

id (genui.compounds.extensions.chembl.models.ChEMBLAssay attribute) (genui.compounds.extensions.chembl.models.ChEMBLTarget attribute) (genui.compounds.models.Activity attribute) (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.ActivityTypes attribute) (genui.compounds.models.ActivityUnits attribute) (genui.compounds.models.ChemicalEntity attribute) (genui.compounds.models.Molecule attribute) (genui.compounds.models.MoleculePic attribute) (genui.compounds.models.MolSet attribute) (genui.compounds.models.MolSetExport attribute) (genui.compounds.models.MolSetExporter attribute) (genui.compounds.models.MolSetFile attribute) (genui.compounds.models.PictureFormat attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) (genui.generators.models.Generator attribute) (genui.maps.models.Point attribute) (genui.models.models.Algorithm attribute) (genui.models.models.AlgorithmMode attribute) (genui.models.models.Model attribute) (genui.models.models.ModelBuilder attribute) (genui.models.models.ModelFile attribute) (genui.models.models.ModelFileFormat attribute) (genui.models.models.ModelParameter attribute) (genui.models.models.ModelParameterValue attribute) (genui.models.models.ModelPerformance attribute) (genui.models.models.ModelPerformanceMetric attribute) (genui.models.models.TrainingStrategy attribute) (genui.models.models.ValidationStrategy attribute) (genui.projects.models.Project attribute) (genui.qsar.models.DescriptorGroup attribute) image (genui.compounds.models.MoleculePic attribute) ImportableModelComponent (class in genui.models.models) ImportableModelComponent.Meta (class in genui.models.models) importFromPackage() (in module genui.utils.inspection)

importModuleWithException() (in module genui.utils.inspection) inchi (genui.compounds.models.ChemicalEntity attribute) (genui.compounds.models.Molecule property) inchiKey (genui.compounds.models.ChemicalEntity attribute) (genui.compounds.models.Molecule property) InconsistentIdentifiersException index() (in module genui.projects.views) info() (in module genui.utils.gpu) init_serializer_class (genui.generators.extensions.genuidrugex.views.DrugExAgentViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExNetViewSet attribute) (genui.maps.views.MapViewSet attribute) (genui.models.views.BuildMixIn attribute) (genui.qsar.views.QSARModelViewSet attribute) initActivities() (genui.compounds.extensions.chembl.initializers.ChEMBLSetInitializer method) initial (genui.compounds.extensions.chembl.migrations.0001_initial.Migration attribute) (genui.compounds.extensions.csvimports.migrations.0001_initial.Migration attribute) (genui.compounds.extensions.generated.migrations.0001_initial.Migration attribute) (genui.compounds.extensions.sdf.migrations.0001_initial.Migration attribute) (genui.compounds.migrations.0001_initial.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0001_initial.Migration attribute) (genui.generators.migrations.0001_initial.Migration attribute) (genui.maps.migrations.0001_initial.Migration attribute) (genui.models.migrations.0001_initial.Migration attribute) (genui.projects.migrations.0001_initial.Migration attribute) (genui.qsar.migrations.0001_initial.Migration attribute) initializer_class (genui.compounds.extensions.chembl.views.ChEMBLSetViewSet attribute) (genui.compounds.extensions.csvimports.views.CSVSetViewSet attribute) (genui.compounds.extensions.generated.views.GeneratedSetViewSet attribute) (genui.compounds.extensions.sdf.views.SDFSetViewSet attribute) (genui.compounds.views.BaseMolSetViewSet attribute) inlines (genui.qsar.admin.QSARModelAdmin attribute) inputFile (genui.generators.extensions.genuidrugex.models.DrugEx attribute) inputType (genui.generators.extensions.genuidrugex.models.DrugExNetTraining attribute) instance (genui.compounds.initializers.base.MolSetInitializer property) INTEGER (genui.models.models.ModelParameter attribute) InvalidParserException is_valid() (genui.qsar.serializers.QSARModelInitSerializer method) Isomap (class in genui.maps.extensions.engstmaps.genuimodels.algorithms) isOnValidationSet (genui.generators.extensions.genuidrugex.models.ModelPerformanceDrugEx attribute)

K

kind (genui.models.models.ModelFile attribute)

KINDS (genui.models.models.ModelFile attribute)

L

list() (genui.compounds.views.ActivitySetViewSet method) (genui.compounds.views.BaseMolSetViewSet method) (genui.compounds.views.MolSetViewSet method) (genui.generators.views.GeneratorViewSet method) (genui.models.views.ModelViewSet method) login() (genui.projects.tests.UserMixIn method)

lookup_field (genui.maps.views.PointsView attribute) (genui.models.views.FilterToModelMixin attribute) (genui.models.views.ModelFileView attribute) low (genui.generators.extensions.genuidrugex.models.ClippedScore attribute) lower (genui.generators.extensions.genuidrugex.models.ClippedScore attribute) (genui.generators.extensions.genuidrugex.models.SmoothHump attribute)

M

MAIN (genui.models.models.ModelFile attribute) mainPic (genui.compounds.models.Molecule property) make_files() (in module genui.maps.migrations.0002_chemspacejson) Map (class in genui.maps.models) map (genui.maps.models.Point attribute) MAP (genui.models.genuimodels.bases.Algorithm attribute) map (genui.models.models.Model attribute) Map.DoesNotExist Map.MultipleObjectsReturned map_id (genui.maps.models.Point attribute) MapAdmin (class in genui.maps.admin) MapAlgorithm (class in genui.maps.genuimodels.algorithms) MapBuilder (class in genui.maps.genuimodels.builders) MapInitSerializer (class in genui.maps.serializers) MapInitSerializer.Meta (class in genui.maps.serializers) MappingAlgViewSet (class in genui.maps.views) MappingStrategy (class in genui.maps.models) mappingstrategy (genui.models.models.TrainingStrategy attribute) MappingStrategy.DoesNotExist MappingStrategy.MultipleObjectsReturned mappingstrategy_set (genui.qsar.models.DescriptorGroup attribute) MappingStrategyInitSerializer (class in genui.maps.serializers) MappingStrategyInitSerializer.Meta (class in genui.maps.serializers) MappingStrategySerializer (class in genui.maps.serializers) MappingStrategySerializer.Meta (class in genui.maps.serializers) maps (genui.compounds.models.MolSet attribute) MapsConfig (class in genui.maps.apps) MapSerializer (class in genui.maps.serializers) MapSerializer.Meta (class in genui.maps.serializers) MapTestCase (class in genui.maps.extensions.engstmaps.tests) (class in genui.maps.tests) MapViewSet (class in genui.maps.views) MCC (class in genui.models.genuimodels.metrics) MDS (class in genui.maps.extensions.engstmaps.genuimodels.algorithms) MeanDrExDesirability (class in genui.generators.extensions.genuidrugex.genuimodels.metrics) media (genui.accounts.admin.PermissionsAdmin property) (genui.compounds.admin.ActivitySetAdmin property) (genui.compounds.admin.MolAdmin property) (genui.compounds.admin.MolSetAdmin property) (genui.compounds.extensions.chembl.admin.ChEMBLActivitiesAdmin property) (genui.compounds.extensions.chembl.admin.ChEMBLCompoundsAdmin property) (genui.compounds.extensions.generated.admin.ChEMBLCompoundsAdmin property) (genui.generators.admin.DrugExAgentAdmin property) (genui.generators.admin.DrugExNetAdmin property) (genui.generators.admin.GeneratorAdmin property) (genui.maps.admin.MapAdmin property) (genui.models.admin.ModelAdmin property) (genui.projects.admin.GenUIProjectAdmin property) (genui.qsar.admin.QSARModelAdmin property) (genui.qsar.admin.UnitsInline property) method (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) method_id (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) metric (genui.models.models.ModelPerformance attribute) metric_id (genui.models.models.ModelPerformance attribute) metrics (genui.models.models.Algorithm attribute) (genui.models.models.AlgorithmMode attribute) (genui.models.models.ValidationStrategy attribute) MetricsViewSet (class in genui.models.views) migrate_entity_info() (in module genui.compounds.migrations.0005_extract_entity) Migration (class in genui.compounds.extensions.chembl.migrations.0001_initial) (class in genui.compounds.extensions.csvimports.migrations.0001_initial) (class in genui.compounds.extensions.csvimports.migrations.0002_auto_20200716_1251) (class in genui.compounds.extensions.csvimports.migrations.0003_auto_20200716_1340) (class in genui.compounds.extensions.generated.migrations.0001_initial) (class in genui.compounds.extensions.sdf.migrations.0001_initial) (class in genui.compounds.extensions.sdf.migrations.0002_auto_20200713_1449) (class in genui.compounds.extensions.sdf.migrations.0003_auto_20200713_1501) (class in genui.compounds.migrations.0001_initial) (class in genui.compounds.migrations.0002_auto_20200427_2039) (class in genui.compounds.migrations.0003_auto_20200512_0817) (class in genui.compounds.migrations.0004_molsetfile) (class in genui.compounds.migrations.0005_extract_entity) (class in genui.compounds.migrations.0006_auto_20200720_0915) (class in genui.compounds.migrations.0007_add_inchi) (class in genui.compounds.migrations.0008_auto_20200723_1212) (class in genui.compounds.migrations.0009_auto_20200728_1326) (class in genui.compounds.migrations.0010_auto_20210428_1426) (class in genui.compounds.migrations.0011_alter_activity_polymorphic_ctype_and_more) (class in genui.generators.extensions.genuidrugex.migrations.0001_initial) (class in genui.generators.extensions.genuidrugex.migrations.0002_drugexagenttraining_drugexagentvalidation_and_more) (class in genui.generators.extensions.genuidrugex.migrations.0003_drugexenvironment_created_and_more) (class in genui.generators.extensions.genuidrugex.migrations.0004_drugexscorer_created_drugexscorer_description_and_more) (class in genui.generators.extensions.genuidrugex.migrations.0005_drugex_inputfile_drugex_molset_and_more) (class in genui.generators.extensions.genuidrugex.migrations.0006_alter_drugexenvironment_rewardscheme) (class in genui.generators.extensions.genuidrugex.migrations.0007_alter_drugexagenttraining_explorer_and_more) (class in genui.generators.extensions.genuidrugex.migrations.0008_clippedscore_smooth) (class in genui.generators.extensions.genuidrugex.migrations.0009_smoothhump) (class in genui.generators.extensions.genuidrugex.migrations.0010_alter_smoothhump_sigma_alter_smoothhump_upper) (class in genui.generators.extensions.genuidrugex.migrations.0011_alter_drugexenvironment_rewardscheme) (class in genui.generators.extensions.genuidrugex.migrations.0012_drugexenvironmentscores) (class in genui.generators.extensions.genuidrugex.migrations.0013_drugexenvironmentscores_modifierson) (class in genui.generators.extensions.genuidrugex.migrations.0014_alter_drugexagenttraining_explorer) (class in genui.generators.migrations.0001_initial) (class in genui.generators.migrations.0002_auto_20200503_1825) (class in genui.generators.migrations.0003_delete_generatedmolset) (class in genui.generators.migrations.0004_alter_generator_polymorphic_ctype) (class in genui.maps.migrations.0001_initial) (class in genui.maps.migrations.0002_chemspacejson) (class in genui.maps.migrations.0003_auto_20200921_0905) (class in genui.maps.migrations.0004_auto_20210121_0812) (class in genui.models.migrations.0001_initial) (class in genui.models.migrations.0002_auto_20200505_0727) (class in genui.models.migrations.0003_roccurvepoint) (class in genui.models.migrations.0004_algorithm_corepackage) (class in genui.models.migrations.0005_auto_20210108_1130) (class in genui.models.migrations.0006_alter_model_polymorphic_ctype_and_more) (class in genui.projects.migrations.0001_initial) (class in genui.projects.migrations.0002_alter_project_polymorphic_ctype) (class in genui.qsar.migrations.0001_initial) (class in genui.qsar.migrations.0002_descriptorgroup_corepackage) (class in genui.qsar.migrations.0003_auto_20210112_0858) mode (genui.models.models.TrainingStrategy attribute) mode_id (genui.models.models.TrainingStrategy attribute) Model (class in genui.models.models) model (genui.compounds.extensions.chembl.serializers.ChEMBLAssaySerializer.Meta attribute) (genui.compounds.extensions.chembl.serializers.ChEMBLSetInitSerializer.Meta attribute) (genui.compounds.extensions.chembl.serializers.ChEMBLSetSerializer.Meta attribute) (genui.compounds.extensions.chembl.serializers.ChEMBLSetUpdateSerializer.Meta attribute) (genui.compounds.extensions.chembl.serializers.ChEMBLTargetSerializer.Meta attribute) (genui.compounds.extensions.csvimports.serializers.CSVSetSerializer.Meta attribute) (genui.compounds.extensions.csvimports.serializers.CSVSetUpdateSerializer.Meta attribute) (genui.compounds.extensions.generated.serializers.GeneratedSetInitSerializer.Meta attribute) (genui.compounds.extensions.generated.serializers.GeneratedSetSerializer.Meta attribute) (genui.compounds.extensions.generated.serializers.GeneratedSetUpdateSerializer.Meta attribute) (genui.compounds.extensions.sdf.serializers.SDFSetSerializer.Meta attribute) (genui.compounds.extensions.sdf.serializers.SDFSetUpdateSerializer.Meta attribute) (genui.compounds.serializers.ActivitySerializer.Meta attribute) (genui.compounds.serializers.ActivitySetSerializer.Meta attribute) (genui.compounds.serializers.ActivityTypeSerializer.Meta attribute) (genui.compounds.serializers.ActivityUnitsSerializer.Meta attribute) (genui.compounds.serializers.GenericMolSetSerializer.Meta attribute) (genui.compounds.serializers.MoleculePicSerializer.Meta attribute) (genui.compounds.serializers.MoleculeSerializer.Meta attribute) (genui.compounds.serializers.MolSetExporterSerializer.Meta attribute) (genui.compounds.serializers.MolSetExportSerializer.Meta attribute) (genui.compounds.serializers.MolSetFileSerializer.Meta attribute) (genui.compounds.serializers.MolSetSerializer.Meta attribute) (genui.compounds.serializers.MolSetUpdateSerializer.Meta attribute) (genui.compounds.serializers.PictureFormatSerializer.Meta attribute) (genui.compounds.views.MolSetExportViewSet attribute) (genui.generators.extensions.genuidrugex.genuimodels.algorithms.DrugExAlgorithm property) (genui.generators.extensions.genuidrugex.models.GenUIModelScorer attribute) (genui.generators.extensions.genuidrugex.serializers.ClippedSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentTrainingStrategyInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentTrainingStrategySerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentValidationStrategyInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentValidationStrategySerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExEnvironmentSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExGeneratorSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExNetInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExNetSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExScorerSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExTrainingStrategyInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExTrainingStrategySerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExValidationStrategyInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExValidationStrategySerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.ModifierSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.PropertyScorerSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.QSARScorerSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.ScoringFunctionSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.SmoothHumpSerializer.Meta attribute) (genui.generators.serializers.GeneratorSerializer.Meta attribute) (genui.maps.extensions.engstmaps.genuimodels.algorithms.Isomap property) (genui.maps.extensions.engstmaps.genuimodels.algorithms.MDS property) (genui.maps.extensions.engstmaps.genuimodels.algorithms.PCA property) (genui.maps.extensions.engstmaps.genuimodels.algorithms.SVD property) (genui.maps.extensions.engstmaps.genuimodels.algorithms.UMAP property) (genui.maps.genuimodels.algorithms.TSNE property) (genui.maps.serializers.MapInitSerializer.Meta attribute) (genui.maps.serializers.MappingStrategyInitSerializer.Meta attribute) (genui.maps.serializers.MappingStrategySerializer.Meta attribute) (genui.maps.serializers.MapSerializer.Meta attribute) (genui.maps.serializers.PointSerializer.Meta attribute) (genui.models.genuimodels.algorithms.RandomForest property) (genui.models.genuimodels.bases.Algorithm property) (genui.models.genuimodels.bases.ModelBuilder property) (genui.models.models.ModelPerformance attribute) (genui.models.serializers.AlgorithmModeSerializer.Meta attribute) (genui.models.serializers.AlgorithmSerializer.Meta attribute) (genui.models.serializers.BasicValidationStrategyInitSerializer.Meta attribute) (genui.models.serializers.ModelFileFormatSerializer.Meta attribute) (genui.models.serializers.ModelFileSerializer.Meta attribute) (genui.models.serializers.ModelParameterSerializer.Meta attribute) (genui.models.serializers.ModelParameterValueSerializer.Meta attribute) (genui.models.serializers.ModelPerformanceMetricSerializer.Meta attribute) (genui.models.serializers.ModelPerformanceSerializer.Meta attribute) (genui.models.serializers.ModelSerializer.Meta attribute) (genui.models.serializers.TrainingStrategyInitSerializer.Meta attribute) (genui.models.serializers.TrainingStrategySerializer.Meta attribute) (genui.models.serializers.ValidationStrategyInitSerializer.Meta attribute) (genui.models.serializers.ValidationStrategySerializer.Meta attribute) (genui.projects.serializers.ProjectSerializer.Meta attribute) (genui.qsar.admin.UnitsInline attribute) (genui.qsar.models.ModelActivitySet attribute) (genui.qsar.serializers.DescriptorGroupSerializer.Meta attribute) (genui.qsar.serializers.ModelActivitySetSerializer.Meta attribute) (genui.qsar.serializers.QSARModelInitSerializer.Meta attribute) (genui.qsar.serializers.QSARModelSerializer.Meta attribute) (genui.qsar.serializers.QSARTrainingStrategyInitSerializer.Meta attribute) (genui.qsar.serializers.QSARTrainingStrategySerializer.Meta attribute) Model.DoesNotExist Model.MultipleObjectsReturned model_class (genui.models.views.FilterToModelMixin attribute) (genui.utils.extensions.tasks.views.ModelTasksView attribute) model_id (genui.generators.extensions.genuidrugex.models.GenUIModelScorer attribute) (genui.models.models.ModelPerformance attribute) (genui.qsar.models.ModelActivitySet attribute) model_ptr (genui.generators.extensions.genuidrugex.models.DrugExAgent attribute) (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) (genui.maps.models.Map attribute) (genui.qsar.models.QSARModel attribute) model_ptr_id (genui.generators.extensions.genuidrugex.models.DrugExAgent attribute) (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) (genui.maps.models.Map attribute) (genui.qsar.models.QSARModel attribute) model_set (genui.models.models.ModelBuilder attribute) (genui.projects.models.Project attribute) ModelActivity (class in genui.qsar.models) modelactivity (genui.compounds.models.Activity attribute) ModelActivity.DoesNotExist ModelActivity.MultipleObjectsReturned ModelActivitySet (class in genui.qsar.models) modelactivityset (genui.compounds.models.ActivitySet attribute) ModelActivitySet.DoesNotExist ModelActivitySet.MultipleObjectsReturned ModelActivitySetSerializer (class in genui.qsar.serializers) ModelActivitySetSerializer.Meta (class in genui.qsar.serializers) ModelAdmin (class in genui.models.admin) ModelBuilder (class in genui.models.genuimodels.bases) (class in genui.models.models) ModelBuilder.DoesNotExist ModelBuilder.MultipleObjectsReturned modelClass (genui.generators.extensions.genuidrugex.models.DrugExAgentTraining property) (genui.generators.extensions.genuidrugex.models.DrugExNetTraining attribute) ModelFile (class in genui.models.models) modelFile (genui.models.models.Model property) ModelFile.DoesNotExist ModelFile.InvalidFileFormatError ModelFile.MultipleObjectsReturned ModelFile.Rejected modelfile_set (genui.models.models.ModelFileFormat attribute) ModelFileFormat (class in genui.models.models) ModelFileFormat.DoesNotExist ModelFileFormat.MultipleObjectsReturned ModelFileFormatSerializer (class in genui.models.serializers) ModelFileFormatSerializer.Meta (class in genui.models.serializers) ModelFileSerializer (class in genui.models.serializers) ModelFileSerializer.Meta (class in genui.models.serializers) ModelFileView (class in genui.models.views) ModelInitTestCase (class in genui.qsar.tests) modelInstance (genui.models.models.ModelFile attribute) (genui.models.models.TrainingStrategy attribute) (genui.models.models.ValidationStrategy attribute) modelInstance_id (genui.models.models.ModelFile attribute) (genui.models.models.TrainingStrategy attribute) (genui.models.models.ValidationStrategy attribute) ModelParameter (class in genui.models.models) ModelParameter.DoesNotExist ModelParameter.MultipleObjectsReturned modelparameter_set (genui.models.models.ModelParameterValue attribute) ModelParameterBool (class in genui.models.models) modelparameterbool (genui.models.models.ModelParameterValue attribute) ModelParameterBool.DoesNotExist ModelParameterBool.MultipleObjectsReturned ModelParameterFloat (class in genui.models.models) modelparameterfloat (genui.models.models.ModelParameterValue attribute) ModelParameterFloat.DoesNotExist ModelParameterFloat.MultipleObjectsReturned ModelParameterInt (class in genui.models.models) modelparameterint (genui.models.models.ModelParameterValue attribute) ModelParameterInt.DoesNotExist ModelParameterInt.MultipleObjectsReturned ModelParameterSerializer (class in genui.models.serializers) ModelParameterSerializer.Meta (class in genui.models.serializers) ModelParameterStr (class in genui.models.models) modelparameterstr (genui.models.models.ModelParameterValue attribute) ModelParameterStr.DoesNotExist ModelParameterStr.MultipleObjectsReturned ModelParameterValue (class in genui.models.models) ModelParameterValue.DoesNotExist ModelParameterValue.MultipleObjectsReturned modelparametervalue_ptr (genui.models.models.ModelParameterBool attribute) (genui.models.models.ModelParameterFloat attribute) (genui.models.models.ModelParameterInt attribute) (genui.models.models.ModelParameterStr attribute) modelparametervalue_ptr_id (genui.models.models.ModelParameterBool attribute) (genui.models.models.ModelParameterFloat attribute) (genui.models.models.ModelParameterInt attribute) (genui.models.models.ModelParameterStr attribute) modelparametervalue_set (genui.models.models.ModelParameter attribute) ModelParameterValueSerializer (class in genui.models.serializers) ModelParameterValueSerializer.Meta (class in genui.models.serializers) ModelPerfomanceNN (class in genui.models.models) modelperfomancenn (genui.models.models.ModelPerformance attribute) ModelPerfomanceNN.DoesNotExist ModelPerfomanceNN.MultipleObjectsReturned modelperfomancenn_ptr (genui.generators.extensions.genuidrugex.models.ModelPerformanceDrugEx attribute) modelperfomancenn_ptr_id (genui.generators.extensions.genuidrugex.models.ModelPerformanceDrugEx attribute) ModelPerformance (class in genui.models.models) ModelPerformance.DoesNotExist ModelPerformance.MultipleObjectsReturned modelperformance_ptr (genui.models.models.ModelPerfomanceNN attribute) (genui.models.models.ModelPerformanceCV attribute) (genui.models.models.ROCCurvePoint attribute) modelperformance_ptr_id (genui.models.models.ModelPerfomanceNN attribute) (genui.models.models.ModelPerformanceCV attribute) (genui.models.models.ROCCurvePoint attribute) modelperformance_set (genui.models.models.ModelPerformanceMetric attribute) ModelPerformanceCV (class in genui.models.models) modelperformancecv (genui.models.models.ModelPerformance attribute) ModelPerformanceCV.DoesNotExist ModelPerformanceCV.MultipleObjectsReturned ModelPerformanceDrugEx (class in genui.generators.extensions.genuidrugex.models) modelperformancedrugex (genui.models.models.ModelPerfomanceNN attribute) ModelPerformanceDrugEx.DoesNotExist ModelPerformanceDrugEx.MultipleObjectsReturned ModelPerformanceListView (class in genui.models.views) ModelPerformanceMetric (class in genui.models.models) ModelPerformanceMetric.DoesNotExist ModelPerformanceMetric.MultipleObjectsReturned ModelPerformanceMetricSerializer (class in genui.models.serializers) ModelPerformanceMetricSerializer.Meta (class in genui.models.serializers) ModelPerformanceSerializer (class in genui.models.serializers) ModelPerformanceSerializer.Meta (class in genui.models.serializers) models (genui.compounds.models.MolSet attribute) ModelsConfig (class in genui.models.apps) ModelSerializer (class in genui.models.serializers) ModelSerializer.Meta (class in genui.models.serializers) ModelTasksView (class in genui.utils.extensions.tasks.views) ModelTasksView.Schema (class in genui.utils.extensions.tasks.views) ModelViewSet (class in genui.models.views) modes (genui.generators.extensions.genuidrugex.genuimodels.metrics.DrugExLoss attribute) (genui.generators.extensions.genuidrugex.genuimodels.metrics.MeanDrExDesirability attribute) (genui.generators.extensions.genuidrugex.genuimodels.metrics.SMILESErrorRate attribute) (genui.generators.extensions.genuidrugex.genuimodels.metrics.SMILESUniqueRate attribute) (genui.models.genuimodels.metrics.MCC attribute) (genui.models.genuimodels.metrics.MSE attribute) (genui.models.genuimodels.metrics.R2 attribute) (genui.models.genuimodels.metrics.ROC attribute) modifier (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) modifier_id (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) ModifierSerializer (class in genui.generators.extensions.genuidrugex.serializers) ModifierSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) modifiersOn (genui.generators.extensions.genuidrugex.models.DrugExEnvironmentScores attribute) ModifierTestSerializer (class in genui.generators.extensions.genuidrugex.serializers) ModifierTestSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) ModifierViewSet (class in genui.generators.extensions.genuidrugex.views) module genui genui.about genui.accounts genui.accounts.admin genui.accounts.apps genui.accounts.authentication genui.accounts.extensions genui.accounts.genuisetup genui.accounts.migrations genui.accounts.models genui.accounts.serializers genui.accounts.tests genui.accounts.urls genui.accounts.views genui.apps genui.compounds genui.compounds.admin genui.compounds.apps genui.compounds.exporters genui.compounds.exporters.base genui.compounds.extensions genui.compounds.extensions.chembl genui.compounds.extensions.chembl.admin genui.compounds.extensions.chembl.apps genui.compounds.extensions.chembl.genuisetup genui.compounds.extensions.chembl.initializers genui.compounds.extensions.chembl.migrations genui.compounds.extensions.chembl.migrations.0001_initial genui.compounds.extensions.chembl.models genui.compounds.extensions.chembl.serializers genui.compounds.extensions.chembl.tests genui.compounds.extensions.chembl.urls genui.compounds.extensions.chembl.views genui.compounds.extensions.csvimports genui.compounds.extensions.csvimports.admin genui.compounds.extensions.csvimports.apps genui.compounds.extensions.csvimports.genuisetup genui.compounds.extensions.csvimports.initializer genui.compounds.extensions.csvimports.migrations genui.compounds.extensions.csvimports.migrations.0001_initial genui.compounds.extensions.csvimports.migrations.0002_auto_20200716_1251 genui.compounds.extensions.csvimports.migrations.0003_auto_20200716_1340 genui.compounds.extensions.csvimports.models genui.compounds.extensions.csvimports.parser genui.compounds.extensions.csvimports.serializers genui.compounds.extensions.csvimports.tests genui.compounds.extensions.csvimports.urls genui.compounds.extensions.csvimports.views genui.compounds.extensions.fileimports genui.compounds.extensions.fileimports.initializer genui.compounds.extensions.fileimports.model genui.compounds.extensions.fileimports.parser genui.compounds.extensions.fileimports.serializer genui.compounds.extensions.generated genui.compounds.extensions.generated.admin genui.compounds.extensions.generated.apps genui.compounds.extensions.generated.genuisetup genui.compounds.extensions.generated.initializers genui.compounds.extensions.generated.migrations genui.compounds.extensions.generated.migrations.0001_initial genui.compounds.extensions.generated.models genui.compounds.extensions.generated.serializers genui.compounds.extensions.generated.tests genui.compounds.extensions.generated.urls genui.compounds.extensions.generated.views genui.compounds.extensions.sdf genui.compounds.extensions.sdf.admin genui.compounds.extensions.sdf.apps genui.compounds.extensions.sdf.exporters genui.compounds.extensions.sdf.genuisetup genui.compounds.extensions.sdf.initializer genui.compounds.extensions.sdf.migrations genui.compounds.extensions.sdf.migrations.0001_initial genui.compounds.extensions.sdf.migrations.0002_auto_20200713_1449 genui.compounds.extensions.sdf.migrations.0003_auto_20200713_1501 genui.compounds.extensions.sdf.models genui.compounds.extensions.sdf.parser genui.compounds.extensions.sdf.serializers genui.compounds.extensions.sdf.tests genui.compounds.extensions.sdf.urls genui.compounds.extensions.sdf.views genui.compounds.genuisetup genui.compounds.helpers genui.compounds.initializers genui.compounds.initializers.base genui.compounds.initializers.exceptions genui.compounds.migrations genui.compounds.migrations.0001_initial genui.compounds.migrations.0002_auto_20200427_2039 genui.compounds.migrations.0003_auto_20200512_0817 genui.compounds.migrations.0004_molsetfile genui.compounds.migrations.0005_extract_entity genui.compounds.migrations.0006_auto_20200720_0915 genui.compounds.migrations.0007_add_inchi genui.compounds.migrations.0008_auto_20200723_1212 genui.compounds.migrations.0009_auto_20200728_1326 genui.compounds.migrations.0010_auto_20210428_1426 genui.compounds.migrations.0011_alter_activity_polymorphic_ctype_and_more genui.compounds.models genui.compounds.serializers genui.compounds.signals genui.compounds.tasks genui.compounds.tests genui.compounds.urls genui.compounds.views genui.extensions genui.generators genui.generators.admin genui.generators.apps genui.generators.extensions genui.generators.extensions.genuidrugex genui.generators.extensions.genuidrugex.admin genui.generators.extensions.genuidrugex.apps genui.generators.extensions.genuidrugex.genuimodels genui.generators.extensions.genuidrugex.genuimodels.algorithms genui.generators.extensions.genuidrugex.genuimodels.builders genui.generators.extensions.genuidrugex.genuimodels.metrics genui.generators.extensions.genuidrugex.genuimodels.monitors genui.generators.extensions.genuidrugex.genuisetup genui.generators.extensions.genuidrugex.migrations genui.generators.extensions.genuidrugex.migrations.0001_initial genui.generators.extensions.genuidrugex.migrations.0002_drugexagenttraining_drugexagentvalidation_and_more genui.generators.extensions.genuidrugex.migrations.0003_drugexenvironment_created_and_more genui.generators.extensions.genuidrugex.migrations.0004_drugexscorer_created_drugexscorer_description_and_more genui.generators.extensions.genuidrugex.migrations.0005_drugex_inputfile_drugex_molset_and_more genui.generators.extensions.genuidrugex.migrations.0006_alter_drugexenvironment_rewardscheme genui.generators.extensions.genuidrugex.migrations.0007_alter_drugexagenttraining_explorer_and_more genui.generators.extensions.genuidrugex.migrations.0008_clippedscore_smooth genui.generators.extensions.genuidrugex.migrations.0009_smoothhump genui.generators.extensions.genuidrugex.migrations.0010_alter_smoothhump_sigma_alter_smoothhump_upper genui.generators.extensions.genuidrugex.migrations.0011_alter_drugexenvironment_rewardscheme genui.generators.extensions.genuidrugex.migrations.0012_drugexenvironmentscores genui.generators.extensions.genuidrugex.migrations.0013_drugexenvironmentscores_modifierson genui.generators.extensions.genuidrugex.migrations.0014_alter_drugexagenttraining_explorer genui.generators.extensions.genuidrugex.models genui.generators.extensions.genuidrugex.serializers genui.generators.extensions.genuidrugex.tasks genui.generators.extensions.genuidrugex.tests genui.generators.extensions.genuidrugex.torchutils genui.generators.extensions.genuidrugex.urls genui.generators.extensions.genuidrugex.views genui.generators.genuisetup genui.generators.migrations genui.generators.migrations.0001_initial genui.generators.migrations.0002_auto_20200503_1825 genui.generators.migrations.0003_delete_generatedmolset genui.generators.migrations.0004_alter_generator_polymorphic_ctype genui.generators.models genui.generators.serializers genui.generators.signals genui.generators.urls genui.generators.views genui.maps genui.maps.admin genui.maps.apps genui.maps.extensions genui.maps.extensions.engstmaps genui.maps.extensions.engstmaps.admin genui.maps.extensions.engstmaps.apps genui.maps.extensions.engstmaps.genuimodels genui.maps.extensions.engstmaps.genuimodels.algorithms genui.maps.extensions.engstmaps.genuisetup genui.maps.extensions.engstmaps.migrations genui.maps.extensions.engstmaps.models genui.maps.extensions.engstmaps.tests genui.maps.extensions.engstmaps.views genui.maps.genuimodels genui.maps.genuimodels.algorithms genui.maps.genuimodels.builders genui.maps.genuisetup genui.maps.migrations genui.maps.migrations.0001_initial genui.maps.migrations.0002_chemspacejson genui.maps.migrations.0003_auto_20200921_0905 genui.maps.migrations.0004_auto_20210121_0812 genui.maps.models genui.maps.serializers genui.maps.tasks genui.maps.tests genui.maps.urls genui.maps.views genui.models genui.models.admin genui.models.apps genui.models.extensions genui.models.genuimodels genui.models.genuimodels.algorithms genui.models.genuimodels.bases genui.models.genuimodels.builders genui.models.genuimodels.metrics genui.models.genuisetup genui.models.helpers genui.models.migrations genui.models.migrations.0001_initial genui.models.migrations.0002_auto_20200505_0727 genui.models.migrations.0003_roccurvepoint genui.models.migrations.0004_algorithm_corepackage genui.models.migrations.0005_auto_20210108_1130 genui.models.migrations.0006_alter_model_polymorphic_ctype_and_more genui.models.models genui.models.serializers genui.models.signals genui.models.tests genui.models.urls genui.models.views genui.projects genui.projects.admin genui.projects.apps genui.projects.extensions genui.projects.genuisetup genui.projects.migrations genui.projects.migrations.0001_initial genui.projects.migrations.0002_alter_project_polymorphic_ctype genui.projects.models genui.projects.serializers genui.projects.signals genui.projects.tasks genui.projects.tests genui.projects.urls genui.projects.views genui.qsar genui.qsar.admin genui.qsar.apps genui.qsar.extensions genui.qsar.genuimodels genui.qsar.genuimodels.bases genui.qsar.genuimodels.builders genui.qsar.genuimodels.descriptors genui.qsar.genuisetup genui.qsar.migrations genui.qsar.migrations.0001_initial genui.qsar.migrations.0002_descriptorgroup_corepackage genui.qsar.migrations.0003_auto_20210112_0858 genui.qsar.models genui.qsar.serializers genui.qsar.tasks genui.qsar.tests genui.qsar.urls genui.qsar.views genui.settings genui.settings.base genui.settings.celery genui.settings.databases genui.settings.databases.debug genui.settings.debug genui.settings.genuibase genui.settings.test genui.utils genui.utils.admin genui.utils.apps genui.utils.exceptions genui.utils.extensions genui.utils.extensions.tasks genui.utils.extensions.tasks.admin genui.utils.extensions.tasks.apps genui.utils.extensions.tasks.genuisetup genui.utils.extensions.tasks.migrations genui.utils.extensions.tasks.models genui.utils.extensions.tasks.progress genui.utils.extensions.tasks.serializers genui.utils.extensions.tasks.tasks genui.utils.extensions.tasks.tests genui.utils.extensions.tasks.urls genui.utils.extensions.tasks.utils genui.utils.extensions.tasks.views genui.utils.genuisetup genui.utils.gpu genui.utils.init genui.utils.inspection genui.utils.migrations genui.utils.models genui.utils.pagination genui.utils.serializers genui.utils.tests genui.utils.urls genui.utils.views genui.wsgi

MolAdmin (class in genui.compounds.admin) Molecule (class in genui.compounds.models) molecule (genui.compounds.models.Activity attribute) (genui.compounds.models.MoleculePic attribute) (genui.maps.models.Point attribute) Molecule.DoesNotExist Molecule.MultipleObjectsReturned molecule_id (genui.compounds.models.Activity attribute) (genui.compounds.models.MoleculePic attribute) (genui.maps.models.Point attribute) molecule_ptr (genui.compounds.extensions.chembl.models.ChEMBLMolecule attribute) (genui.compounds.extensions.csvimports.models.CSVMolecule attribute) (genui.compounds.extensions.sdf.models.SDFMolecule attribute) molecule_ptr_id (genui.compounds.extensions.chembl.models.ChEMBLMolecule attribute) (genui.compounds.extensions.csvimports.models.CSVMolecule attribute) (genui.compounds.extensions.sdf.models.SDFMolecule attribute) MoleculePagination (class in genui.compounds.views) MoleculePic (class in genui.compounds.models) MoleculePic.DoesNotExist MoleculePic.MultipleObjectsReturned moleculepic_set (genui.compounds.models.PictureFormat attribute) MoleculePicSerializer (class in genui.compounds.serializers) MoleculePicSerializer.Meta (class in genui.compounds.serializers) molecules (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.ChemicalEntity attribute) (genui.compounds.models.MolSet attribute) (genui.generators.extensions.genuidrugex.models.DrugExNetTraining.StructureInputType attribute) molecules_id (genui.compounds.models.ActivitySet attribute) MoleculeSerializer (class in genui.compounds.serializers) MoleculeSerializer.Meta (class in genui.compounds.serializers) MoleculeViewSet (class in genui.compounds.views) mols_param (genui.compounds.views.ActivitySetViewSet attribute) MolSet (class in genui.compounds.models) molset (genui.compounds.models.MolSetExport attribute) (genui.compounds.models.MolSetFile attribute) (genui.generators.extensions.genuidrugex.models.DrugEx attribute) (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) (genui.qsar.models.QSARModel attribute) MolSet.DoesNotExist MolSet.MultipleObjectsReturned molset_id (genui.compounds.models.MolSetExport attribute) (genui.compounds.models.MolSetFile attribute) (genui.generators.extensions.genuidrugex.models.DrugEx attribute) (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) (genui.qsar.models.QSARModel attribute) molset_id_param (genui.compounds.views.MoleculeViewSet attribute) molset_ptr (genui.compounds.extensions.chembl.models.ChEMBLCompounds attribute) (genui.compounds.extensions.csvimports.models.CSVCompounds attribute) (genui.compounds.extensions.fileimports.model.FileCompounds attribute) (genui.compounds.extensions.generated.models.GeneratedMolSet attribute) (genui.compounds.extensions.sdf.models.SDFCompounds attribute) molset_ptr_id (genui.compounds.extensions.chembl.models.ChEMBLCompounds attribute) (genui.compounds.extensions.csvimports.models.CSVCompounds attribute) (genui.compounds.extensions.fileimports.model.FileCompounds attribute) (genui.compounds.extensions.generated.models.GeneratedMolSet attribute) (genui.compounds.extensions.sdf.models.SDFCompounds attribute) molset_set (genui.projects.models.Project attribute) MolSetAdmin (class in genui.compounds.admin) MolSetExport (class in genui.compounds.models) MolSetExport.DoesNotExist MolSetExport.MultipleObjectsReturned molsetexport_set (genui.compounds.models.MolSetExporter attribute) MolSetExporter (class in genui.compounds.models) MolSetExporter.DoesNotExist MolSetExporter.MultipleObjectsReturned MolSetExporterSerializer (class in genui.compounds.serializers) MolSetExporterSerializer.Meta (class in genui.compounds.serializers) MolSetExporterViewSet (class in genui.compounds.views) MolSetExportSerializer (class in genui.compounds.serializers) MolSetExportSerializer.Meta (class in genui.compounds.serializers) MolSetExportViewSet (class in genui.compounds.views) MolSetFile (class in genui.compounds.models) MolSetFile.DoesNotExist MolSetFile.MultipleObjectsReturned MolSetFileSerializer (class in genui.compounds.serializers) MolSetFileSerializer.Meta (class in genui.compounds.serializers) MolSetInitializer (class in genui.compounds.initializers.base) MolSetInitializer.DuplicateChemicalEntityWarning MolSetMoleculesView (class in genui.compounds.views) molsets (genui.maps.models.Map attribute) MolSetSerializer (class in genui.compounds.serializers) MolSetSerializer.AutoSchemaMixIn (class in genui.compounds.serializers) MolSetSerializer.Meta (class in genui.compounds.serializers) MolSetUpdateSerializer (class in genui.compounds.serializers) MolSetUpdateSerializer.Meta (class in genui.compounds.serializers) MolSetViewSet (class in genui.compounds.views) morganFP (genui.compounds.models.ChemicalEntity attribute) MorganFPCalculator (class in genui.qsar.genuimodels.descriptors) MSE (class in genui.models.genuimodels.metrics)

N

name (genui.accounts.apps.AccountsConfig attribute) (genui.compounds.apps.CompoundsConfig attribute) (genui.compounds.exporters.base.BaseMolSetExporter attribute) (genui.compounds.extensions.chembl.apps.ChemblConfig attribute) (genui.compounds.extensions.chembl.views.ChEMBLAssayViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLSetViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLTargetViewSet attribute) (genui.compounds.extensions.csvimports.apps.CsvimportsConfig attribute) (genui.compounds.extensions.csvimports.models.CSVMolecule attribute) (genui.compounds.extensions.csvimports.views.CSVSetViewSet attribute) (genui.compounds.extensions.generated.apps.GeneratedConfig attribute) (genui.compounds.extensions.generated.views.GeneratedSetViewSet attribute) (genui.compounds.extensions.sdf.apps.SdfConfig attribute) (genui.compounds.extensions.sdf.exporters.SDFExporter attribute) (genui.compounds.extensions.sdf.models.SDFMolecule attribute) (genui.compounds.extensions.sdf.views.SDFSetViewSet attribute) (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.MolSet attribute) (genui.compounds.models.MolSetExport attribute) (genui.compounds.models.MolSetExporter attribute) (genui.compounds.views.ActivitySetViewSet attribute) (genui.compounds.views.MoleculeViewSet attribute) (genui.compounds.views.MolSetExporterViewSet attribute) (genui.compounds.views.MolSetExportViewSet attribute) (genui.compounds.views.MolSetViewSet attribute) (genui.generators.apps.GeneratorsConfig attribute) (genui.generators.extensions.genuidrugex.apps.GenuidrugexConfig attribute) (genui.generators.extensions.genuidrugex.genuimodels.algorithms.DrugExAgent attribute) (genui.generators.extensions.genuidrugex.genuimodels.algorithms.DrugExNetwork attribute) (genui.generators.extensions.genuidrugex.genuimodels.metrics.DrugExLoss attribute) (genui.generators.extensions.genuidrugex.genuimodels.metrics.MeanDrExDesirability attribute) (genui.generators.extensions.genuidrugex.genuimodels.metrics.SMILESErrorRate attribute) (genui.generators.extensions.genuidrugex.genuimodels.metrics.SMILESUniqueRate attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) (genui.generators.extensions.genuidrugex.views.ClippedViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExAgentViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExNetViewSet attribute) (genui.generators.extensions.genuidrugex.views.EnvironmentViewSet attribute) (genui.generators.extensions.genuidrugex.views.GeneratorViewSet attribute) (genui.generators.extensions.genuidrugex.views.HumpViewSet attribute) (genui.generators.extensions.genuidrugex.views.ModifierViewSet attribute) (genui.generators.extensions.genuidrugex.views.PropertyScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.QSARScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScoringMethodViewSet attribute) (genui.generators.models.Generator attribute) (genui.generators.views.GeneratorAlgorithmViewSet attribute) (genui.generators.views.GeneratorMetricsViewSet attribute) (genui.generators.views.GeneratorViewSet attribute) (genui.maps.apps.MapsConfig attribute) (genui.maps.extensions.engstmaps.apps.EngstmapsConfig attribute) (genui.maps.extensions.engstmaps.genuimodels.algorithms.Isomap attribute) (genui.maps.extensions.engstmaps.genuimodels.algorithms.MDS attribute) (genui.maps.extensions.engstmaps.genuimodels.algorithms.PCA attribute) (genui.maps.extensions.engstmaps.genuimodels.algorithms.SVD attribute) (genui.maps.extensions.engstmaps.genuimodels.algorithms.UMAP attribute) (genui.maps.genuimodels.algorithms.TSNE attribute) (genui.maps.views.MappingAlgViewSet attribute) (genui.maps.views.MapViewSet attribute) (genui.models.apps.ModelsConfig attribute) (genui.models.genuimodels.algorithms.RandomForest attribute) (genui.models.genuimodels.bases.Algorithm attribute) (genui.models.genuimodels.bases.ValidationMetric attribute) (genui.models.genuimodels.metrics.MCC attribute) (genui.models.genuimodels.metrics.MSE attribute) (genui.models.genuimodels.metrics.R2 attribute) (genui.models.genuimodels.metrics.ROC attribute) (genui.models.models.Algorithm attribute) (genui.models.models.AlgorithmMode attribute) (genui.models.models.Model attribute) (genui.models.models.ModelBuilder attribute) (genui.models.models.ModelParameter attribute) (genui.models.models.ModelPerformanceMetric attribute) (genui.projects.apps.ProjectsConfig attribute) (genui.projects.models.BaseDataSet attribute) (genui.projects.models.BaseProject attribute) (genui.projects.models.DataSet attribute) (genui.projects.models.Project attribute) (genui.projects.views.GenUIProjectViewSet attribute) (genui.qsar.apps.QsarConfig attribute) (genui.qsar.models.DescriptorGroup attribute) (genui.qsar.views.DescriptorGroupsViewSet attribute) (genui.qsar.views.QSARAlgorithmViewSet attribute) (genui.qsar.views.QSARMetricsViewSet attribute) (genui.qsar.views.QSARModelViewSet attribute) (genui.utils.apps.UtilsConfig attribute) (genui.utils.extensions.tasks.apps.TasksConfig attribute)

nameCol (genui.compounds.extensions.csvimports.models.CSVCompounds attribute) NON_POLYMORPHIC_CASCADE() (in module genui.utils.models) note (genui.generators.extensions.genuidrugex.models.ModelPerformanceDrugEx attribute) (genui.models.models.ModelFile attribute)

O

objects (genui.compounds.extensions.chembl.models.ChEMBLAssay attribute) (genui.compounds.extensions.chembl.models.ChEMBLTarget attribute) (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.ActivityTypes attribute) (genui.compounds.models.ActivityUnits attribute) (genui.compounds.models.ChemicalEntity attribute) (genui.compounds.models.MoleculePic attribute) (genui.compounds.models.MolSet attribute) (genui.compounds.models.MolSetExport attribute) (genui.compounds.models.MolSetExporter attribute) (genui.compounds.models.PictureFormat attribute) (genui.generators.models.Generator attribute) (genui.maps.models.Point attribute) (genui.models.models.Algorithm attribute) (genui.models.models.AlgorithmMode attribute) (genui.models.models.Model attribute) (genui.models.models.ModelBuilder attribute) (genui.models.models.ModelFile attribute) (genui.models.models.ModelFileFormat attribute) (genui.models.models.ModelParameter attribute) (genui.models.models.ModelPerformanceMetric attribute) (genui.qsar.models.DescriptorGroup attribute) onFileSave() (genui.models.models.Model method) operations (genui.compounds.extensions.chembl.migrations.0001_initial.Migration attribute) (genui.compounds.extensions.csvimports.migrations.0001_initial.Migration attribute) (genui.compounds.extensions.csvimports.migrations.0002_auto_20200716_1251.Migration attribute) (genui.compounds.extensions.csvimports.migrations.0003_auto_20200716_1340.Migration attribute) (genui.compounds.extensions.generated.migrations.0001_initial.Migration attribute) (genui.compounds.extensions.sdf.migrations.0001_initial.Migration attribute) (genui.compounds.extensions.sdf.migrations.0002_auto_20200713_1449.Migration attribute) (genui.compounds.extensions.sdf.migrations.0003_auto_20200713_1501.Migration attribute) (genui.compounds.migrations.0001_initial.Migration attribute) (genui.compounds.migrations.0002_auto_20200427_2039.Migration attribute) (genui.compounds.migrations.0003_auto_20200512_0817.Migration attribute) (genui.compounds.migrations.0004_molsetfile.Migration attribute) (genui.compounds.migrations.0005_extract_entity.Migration attribute) (genui.compounds.migrations.0006_auto_20200720_0915.Migration attribute) (genui.compounds.migrations.0007_add_inchi.Migration attribute) (genui.compounds.migrations.0008_auto_20200723_1212.Migration attribute) (genui.compounds.migrations.0009_auto_20200728_1326.Migration attribute) (genui.compounds.migrations.0010_auto_20210428_1426.Migration attribute) (genui.compounds.migrations.0011_alter_activity_polymorphic_ctype_and_more.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0001_initial.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0002_drugexagenttraining_drugexagentvalidation_and_more.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0003_drugexenvironment_created_and_more.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0004_drugexscorer_created_drugexscorer_description_and_more.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0005_drugex_inputfile_drugex_molset_and_more.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0006_alter_drugexenvironment_rewardscheme.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0007_alter_drugexagenttraining_explorer_and_more.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0008_clippedscore_smooth.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0009_smoothhump.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0010_alter_smoothhump_sigma_alter_smoothhump_upper.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0011_alter_drugexenvironment_rewardscheme.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0012_drugexenvironmentscores.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0013_drugexenvironmentscores_modifierson.Migration attribute) (genui.generators.extensions.genuidrugex.migrations.0014_alter_drugexagenttraining_explorer.Migration attribute) (genui.generators.migrations.0001_initial.Migration attribute) (genui.generators.migrations.0002_auto_20200503_1825.Migration attribute) (genui.generators.migrations.0003_delete_generatedmolset.Migration attribute) (genui.generators.migrations.0004_alter_generator_polymorphic_ctype.Migration attribute) (genui.maps.migrations.0001_initial.Migration attribute) (genui.maps.migrations.0002_chemspacejson.Migration attribute) (genui.maps.migrations.0003_auto_20200921_0905.Migration attribute) (genui.maps.migrations.0004_auto_20210121_0812.Migration attribute) (genui.models.migrations.0001_initial.Migration attribute) (genui.models.migrations.0002_auto_20200505_0727.Migration attribute) (genui.models.migrations.0003_roccurvepoint.Migration attribute) (genui.models.migrations.0004_algorithm_corepackage.Migration attribute) (genui.models.migrations.0005_auto_20210108_1130.Migration attribute) (genui.models.migrations.0006_alter_model_polymorphic_ctype_and_more.Migration attribute) (genui.projects.migrations.0001_initial.Migration attribute) (genui.projects.migrations.0002_alter_project_polymorphic_ctype.Migration attribute) (genui.qsar.migrations.0001_initial.Migration attribute) (genui.qsar.migrations.0002_descriptorgroup_corepackage.Migration attribute) (genui.qsar.migrations.0003_auto_20210112_0858.Migration attribute)

OverwriteStorage (class in genui.utils.models) owner (genui.projects.models.BaseProject attribute) (genui.projects.models.Project attribute) owner_id (genui.projects.models.BaseProject attribute) (genui.projects.models.Project attribute) owner_relation (genui.accounts.serializers.FilterToUserMixIn attribute) (genui.compounds.views.ActivitySetViewSet attribute) (genui.compounds.views.BaseMolSetViewSet attribute) (genui.compounds.views.MoleculeViewSet attribute) (genui.compounds.views.MolSetViewSet attribute) (genui.generators.extensions.genuidrugex.views.EnvironmentViewSet attribute) (genui.generators.extensions.genuidrugex.views.GeneratorViewSet attribute) (genui.generators.extensions.genuidrugex.views.ModifierViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScoringMethodViewSet attribute) (genui.generators.views.GeneratorViewSet attribute) (genui.maps.views.PointsView attribute) (genui.models.views.ModelFileView attribute) (genui.models.views.ModelPerformanceListView attribute) (genui.models.views.ModelViewSet attribute)

P

page_size (genui.compounds.views.ActivityPagination attribute) (genui.compounds.views.MoleculePagination attribute) (genui.maps.views.PointPagination attribute) (genui.models.views.PerformancePagination attribute) (genui.utils.pagination.GenuiPagination attribute) pagination_class (genui.compounds.views.MoleculeViewSet attribute) (genui.compounds.views.MolSetMoleculesView attribute) (genui.maps.views.PointsView attribute) (genui.models.views.ModelPerformanceListView attribute) parameter (genui.models.models.ModelParameterValue attribute) parameter_id (genui.models.models.ModelParameterValue attribute) parameters (genui.generators.extensions.genuidrugex.genuimodels.algorithms.DrugExAgent attribute) (genui.generators.extensions.genuidrugex.genuimodels.algorithms.DrugExNetwork attribute) (genui.maps.extensions.engstmaps.genuimodels.algorithms.Isomap attribute) (genui.maps.extensions.engstmaps.genuimodels.algorithms.MDS attribute) (genui.maps.extensions.engstmaps.genuimodels.algorithms.UMAP attribute) (genui.maps.genuimodels.algorithms.TSNE attribute) (genui.models.genuimodels.algorithms.RandomForest attribute) (genui.models.genuimodels.bases.Algorithm attribute) (genui.models.models.Algorithm attribute) (genui.models.models.TrainingStrategy attribute) parent (genui.compounds.models.Activity attribute) (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) parent_id (genui.compounds.models.Activity attribute) (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) paretoCrowding (genui.generators.extensions.genuidrugex.models.DrugExEnvironment.RewardScheme attribute) paretoSimilarity (genui.generators.extensions.genuidrugex.models.DrugExEnvironment.RewardScheme attribute) parse() (genui.compounds.extensions.csvimports.parser.CSVParser method) (genui.compounds.extensions.fileimports.parser.FileParser method) (genui.compounds.extensions.sdf.parser.SDFParser method) parseMols() (genui.compounds.extensions.fileimports.initializer.FileInitializer method) parser_classes (genui.compounds.extensions.csvimports.views.CSVSetViewSet attribute) (genui.compounds.extensions.sdf.views.SDFSetViewSet attribute) (genui.models.views.ModelFileView attribute) parserCallback() (genui.compounds.extensions.csvimports.initializer.CSVSetInitializer method) (genui.compounds.extensions.sdf.initializer.SDFSetInitializer method) parseValue() (genui.models.models.ModelParameterBool static method) (genui.models.models.ModelParameterFloat static method) (genui.models.models.ModelParameterInt static method) (genui.models.models.ModelParameterValue static method) path (genui.models.models.ModelFile property) PCA (class in genui.maps.extensions.engstmaps.genuimodels.algorithms) performance (genui.models.models.Model attribute) PerformancePagination (class in genui.models.views) permission_classes (genui.generators.extensions.genuidrugex.views.ModifierViewSet attribute) (genui.utils.extensions.tasks.views.ModelTasksView attribute) (genui.utils.extensions.tasks.views.TaskProgressView attribute) PermissionsAdmin (class in genui.accounts.admin) pics (genui.compounds.models.Molecule attribute) PictureFormat (class in genui.compounds.models) PictureFormat.DoesNotExist PictureFormat.MultipleObjectsReturned PictureFormatSerializer (class in genui.compounds.serializers) PictureFormatSerializer.Meta (class in genui.compounds.serializers) PNG (genui.compounds.models.PictureFormat attribute) Point (class in genui.maps.models) Point.DoesNotExist Point.MultipleObjectsReturned point_set (genui.compounds.models.Molecule attribute) PointPagination (class in genui.maps.views) points (genui.maps.models.Map attribute) (genui.models.models.ModelPerformance attribute) PointSerializer (class in genui.maps.serializers) PointSerializer.Meta (class in genui.maps.serializers) PointsView (class in genui.maps.views) polymorphic_ctype (genui.compounds.models.Activity attribute) (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.Molecule attribute) (genui.compounds.models.MolSet attribute) (genui.compounds.models.MolSetFile attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) (genui.generators.models.Generator attribute) (genui.models.models.Model attribute) (genui.models.models.ModelParameterValue attribute) (genui.models.models.ModelPerformance attribute) (genui.models.models.TrainingStrategy attribute) (genui.models.models.ValidationStrategy attribute) (genui.projects.models.BaseDataSet attribute) (genui.projects.models.BaseProject attribute) (genui.projects.models.DataSet attribute) (genui.projects.models.PolymorphicAbstractModel attribute) (genui.projects.models.Project attribute) polymorphic_ctype_id (genui.compounds.models.Activity attribute) (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.Molecule attribute) (genui.compounds.models.MolSet attribute) (genui.compounds.models.MolSetFile attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) (genui.generators.models.Generator attribute) (genui.models.models.Model attribute) (genui.models.models.ModelParameterValue attribute) (genui.models.models.ModelPerformance attribute) (genui.models.models.TrainingStrategy attribute) (genui.models.models.ValidationStrategy attribute) (genui.projects.models.BaseDataSet attribute) (genui.projects.models.BaseProject attribute) (genui.projects.models.DataSet attribute) (genui.projects.models.PolymorphicAbstractModel attribute) (genui.projects.models.Project attribute) polymorphic_primary_key_name (genui.compounds.extensions.chembl.models.ChEMBLActivities attribute) (genui.compounds.extensions.chembl.models.ChEMBLActivity attribute) (genui.compounds.extensions.chembl.models.ChEMBLCompounds attribute) (genui.compounds.extensions.chembl.models.ChEMBLMolecule attribute) (genui.compounds.extensions.csvimports.models.CSVCompounds attribute) (genui.compounds.extensions.csvimports.models.CSVMolecule attribute) (genui.compounds.extensions.fileimports.model.FileCompounds attribute) (genui.compounds.extensions.generated.models.GeneratedMolSet attribute) (genui.compounds.extensions.sdf.models.SDFCompounds attribute) (genui.compounds.extensions.sdf.models.SDFMolecule attribute) (genui.compounds.models.Activity attribute) (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.Molecule attribute) (genui.compounds.models.MolSet attribute) (genui.compounds.models.MolSetFile attribute) (genui.generators.extensions.genuidrugex.models.ClippedScore attribute) (genui.generators.extensions.genuidrugex.models.DrugEx attribute) (genui.generators.extensions.genuidrugex.models.DrugExAgent attribute) (genui.generators.extensions.genuidrugex.models.DrugExAgentTraining attribute) (genui.generators.extensions.genuidrugex.models.DrugExAgentValidation attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironmentScores attribute) (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) (genui.generators.extensions.genuidrugex.models.DrugExNetTraining attribute) (genui.generators.extensions.genuidrugex.models.DrugExNetValidation attribute) (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) (genui.generators.extensions.genuidrugex.models.GenUIModelScorer attribute) (genui.generators.extensions.genuidrugex.models.ModelPerformanceDrugEx attribute) (genui.generators.extensions.genuidrugex.models.PropertyScorer attribute) (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) (genui.generators.extensions.genuidrugex.models.SmoothHump attribute) (genui.generators.models.Generator attribute) (genui.maps.models.Map attribute) (genui.maps.models.MappingStrategy attribute) (genui.models.models.BasicValidationStrategy attribute) (genui.models.models.CV attribute) (genui.models.models.Model attribute) (genui.models.models.ModelParameterBool attribute) (genui.models.models.ModelParameterFloat attribute) (genui.models.models.ModelParameterInt attribute) (genui.models.models.ModelParameterStr attribute) (genui.models.models.ModelParameterValue attribute) (genui.models.models.ModelPerfomanceNN attribute) (genui.models.models.ModelPerformance attribute) (genui.models.models.ModelPerformanceCV attribute) (genui.models.models.ROCCurvePoint attribute) (genui.models.models.TrainingStrategy attribute) (genui.models.models.ValidationSet attribute) (genui.models.models.ValidationStrategy attribute) (genui.projects.models.Project attribute) (genui.qsar.models.ModelActivity attribute) (genui.qsar.models.ModelActivitySet attribute) (genui.qsar.models.QSARModel attribute) (genui.qsar.models.QSARTrainingStrategy attribute)

polymorphic_super_sub_accessors_replaced (genui.compounds.extensions.chembl.models.ChEMBLActivities attribute) (genui.compounds.extensions.chembl.models.ChEMBLActivity attribute) (genui.compounds.extensions.chembl.models.ChEMBLCompounds attribute) (genui.compounds.extensions.chembl.models.ChEMBLMolecule attribute) (genui.compounds.extensions.csvimports.models.CSVCompounds attribute) (genui.compounds.extensions.csvimports.models.CSVMolecule attribute) (genui.compounds.extensions.fileimports.model.FileCompounds attribute) (genui.compounds.extensions.generated.models.GeneratedMolSet attribute) (genui.compounds.extensions.sdf.models.SDFCompounds attribute) (genui.compounds.extensions.sdf.models.SDFMolecule attribute) (genui.compounds.models.Activity attribute) (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.Molecule attribute) (genui.compounds.models.MolSet attribute) (genui.compounds.models.MolSetFile attribute) (genui.generators.extensions.genuidrugex.models.ClippedScore attribute) (genui.generators.extensions.genuidrugex.models.DrugEx attribute) (genui.generators.extensions.genuidrugex.models.DrugExAgent attribute) (genui.generators.extensions.genuidrugex.models.DrugExAgentTraining attribute) (genui.generators.extensions.genuidrugex.models.DrugExAgentValidation attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironmentScores attribute) (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) (genui.generators.extensions.genuidrugex.models.DrugExNetTraining attribute) (genui.generators.extensions.genuidrugex.models.DrugExNetValidation attribute) (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) (genui.generators.extensions.genuidrugex.models.GenUIModelScorer attribute) (genui.generators.extensions.genuidrugex.models.ModelPerformanceDrugEx attribute) (genui.generators.extensions.genuidrugex.models.PropertyScorer attribute) (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) (genui.generators.extensions.genuidrugex.models.SmoothHump attribute) (genui.generators.models.Generator attribute) (genui.maps.models.Map attribute) (genui.maps.models.MappingStrategy attribute) (genui.models.models.BasicValidationStrategy attribute) (genui.models.models.CV attribute) (genui.models.models.Model attribute) (genui.models.models.ModelParameterBool attribute) (genui.models.models.ModelParameterFloat attribute) (genui.models.models.ModelParameterInt attribute) (genui.models.models.ModelParameterStr attribute) (genui.models.models.ModelParameterValue attribute) (genui.models.models.ModelPerfomanceNN attribute) (genui.models.models.ModelPerformance attribute) (genui.models.models.ModelPerformanceCV attribute) (genui.models.models.ROCCurvePoint attribute) (genui.models.models.TrainingStrategy attribute) (genui.models.models.ValidationSet attribute) (genui.models.models.ValidationStrategy attribute) (genui.projects.models.BaseDataSet attribute) (genui.projects.models.BaseProject attribute) (genui.projects.models.DataSet attribute) (genui.projects.models.PolymorphicAbstractModel attribute) (genui.projects.models.Project attribute) (genui.qsar.models.ModelActivity attribute) (genui.qsar.models.ModelActivitySet attribute) (genui.qsar.models.QSARModel attribute) (genui.qsar.models.QSARTrainingStrategy attribute) PolymorphicAbstractModel (class in genui.projects.models) PolymorphicAbstractModel.Meta (class in genui.projects.models) PolymorphicAbstractModelMeta (class in genui.projects.models) PolymorphicTaskManager (class in genui.utils.extensions.tasks.models) populate() (in module genui.compounds.tasks) populateActivitySet() (genui.qsar.genuimodels.bases.QSARModelBuilder method) (genui.qsar.genuimodels.builders.BasicQSARModelBuilder method) populateInstance() (genui.compounds.extensions.chembl.initializers.ChEMBLSetInitializer method) (genui.compounds.extensions.csvimports.initializer.CSVSetInitializer method) (genui.compounds.extensions.fileimports.initializer.FileInitializer method) (genui.compounds.extensions.generated.initializers.GeneratedSetInitializer method) (genui.compounds.extensions.sdf.initializer.SDFSetInitializer method) (genui.compounds.initializers.base.MolSetInitializer method) (genui.compounds.tests.DuplicateEntitiesTest.InitializerWithMultipleEntities method) postDrugExModelFile() (genui.generators.extensions.genuidrugex.tests.SetUpDrugExGeneratorsMixIn method) POSTGRES_DB POSTGRES_HOST POSTGRES_PASSWORD POSTGRES_USER predict() (genui.generators.extensions.genuidrugex.genuimodels.algorithms.DrugExAlgorithm method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.Isomap method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.MDS method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.PCA method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.SVD method) (genui.maps.extensions.engstmaps.genuimodels.algorithms.UMAP method) (genui.maps.genuimodels.algorithms.MapAlgorithm method) (genui.maps.genuimodels.algorithms.TSNE method) (genui.models.genuimodels.algorithms.RandomForest method) (genui.models.genuimodels.bases.Algorithm method) (genui.models.genuimodels.bases.PredictionMixIn method) predict_task (genui.models.views.PredictMixIn attribute) (genui.qsar.views.QSARModelViewSet attribute) PredictionMixIn (class in genui.models.genuimodels.bases) predictions (genui.qsar.models.QSARModel attribute) predictions() (genui.qsar.views.QSARModelViewSet method) predictionsType (genui.qsar.models.QSARModel attribute) predictionsType_id (genui.qsar.models.QSARModel attribute) predictionsUnits (genui.qsar.models.QSARModel attribute) predictionsUnits_id (genui.qsar.models.QSARModel attribute) PredictMixIn (class in genui.models.views) predictMolecules() (genui.qsar.genuimodels.builders.BasicQSARModelBuilder method) predictWithModel() (genui.qsar.tests.QSARModelInit method) prepareData() (genui.generators.extensions.genuidrugex.models.DrugExNet method) pretty_size() (in module genui.generators.extensions.genuidrugex.torchutils) probasToClasses() (genui.models.genuimodels.bases.ValidationMetric static method) processMetaData() (genui.generators.extensions.genuidrugex.models.DrugExNetTraining method) (genui.models.models.TrainingStrategy method) processRow() (genui.compounds.extensions.csvimports.parser.CSVParser method) ProgressMixIn (class in genui.models.genuimodels.bases) ProgressRecorder (class in genui.utils.extensions.tasks.progress) Project (class in genui.projects.models) project (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.MolSet attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) (genui.generators.models.Generator attribute) (genui.models.models.Model attribute) (genui.projects.models.BaseDataSet attribute) (genui.projects.models.DataSet attribute) Project.DoesNotExist Project.MultipleObjectsReturned project_id (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.MolSet attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) (genui.generators.models.Generator attribute) (genui.models.models.Model attribute) (genui.projects.models.BaseDataSet attribute) (genui.projects.models.DataSet attribute) project_id_param (genui.compounds.views.ActivitySetViewSet attribute) (genui.compounds.views.BaseMolSetViewSet attribute) (genui.compounds.views.MolSetViewSet attribute) (genui.generators.views.GeneratorViewSet attribute) (genui.models.views.ModelViewSet attribute) ProjectMixIn (class in genui.projects.tests) ProjectsConfig (class in genui.projects.apps) ProjectSerializer (class in genui.projects.serializers) ProjectSerializer.Meta (class in genui.projects.serializers) ProjectTestCase (class in genui.projects.tests) prop (genui.generators.extensions.genuidrugex.models.PropertyScorer attribute) properties (genui.compounds.views.MoleculeViewSet attribute) PropertyScorer (class in genui.generators.extensions.genuidrugex.models) propertyscorer (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) PropertyScorer.DoesNotExist PropertyScorer.MultipleObjectsReturned PropertyScorerSerializer (class in genui.generators.extensions.genuidrugex.serializers) PropertyScorerSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) PropertyScorerViewSet (class in genui.generators.extensions.genuidrugex.views) providers (genui.compounds.models.Molecule attribute) PYTHONPATH

Q

QSARAlgorithmViewSet (class in genui.qsar.views) QsarConfig (class in genui.qsar.apps) QSARMetricsViewSet (class in genui.qsar.views) QSARModel (class in genui.qsar.models) qsarmodel (genui.models.models.Model attribute) QSARModel.DoesNotExist QSARModel.MultipleObjectsReturned qsarmodel_set (genui.compounds.models.ActivityTypes attribute) (genui.compounds.models.ActivityUnits attribute) QSARModelAdmin (class in genui.qsar.admin) QSARModelBuilder (class in genui.qsar.genuimodels.bases) QSARModelInit (class in genui.qsar.tests) QSARModelInitSerializer (class in genui.qsar.serializers) QSARModelInitSerializer.Meta (class in genui.qsar.serializers) QSARModelSerializer (class in genui.qsar.serializers) QSARModelSerializer.Meta (class in genui.qsar.serializers) QSARModelViewSet (class in genui.qsar.views) QSARScorerSerializer (class in genui.generators.extensions.genuidrugex.serializers) QSARScorerSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) QSARScorerViewSet (class in genui.generators.extensions.genuidrugex.views) QSARTrainingStrategy (class in genui.qsar.models) qsartrainingstrategy (genui.models.models.TrainingStrategy attribute) QSARTrainingStrategy.DoesNotExist QSARTrainingStrategy.MultipleObjectsReturned qsartrainingstrategy_set (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.ActivityTypes attribute) (genui.qsar.models.DescriptorGroup attribute) QSARTrainingStrategyInitSerializer (class in genui.qsar.serializers) QSARTrainingStrategyInitSerializer.Meta (class in genui.qsar.serializers) QSARTrainingStrategySerializer (class in genui.qsar.serializers) QSARTrainingStrategySerializer.Meta (class in genui.qsar.serializers) queryset (genui.compounds.extensions.chembl.views.ChEMBLAssayViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLSetViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLTargetViewSet attribute) (genui.compounds.extensions.csvimports.views.CSVSetViewSet attribute) (genui.compounds.extensions.generated.views.GeneratedSetViewSet attribute) (genui.compounds.extensions.sdf.views.SDFSetViewSet attribute) (genui.compounds.views.ActivitySetViewSet attribute) (genui.compounds.views.MoleculeViewSet attribute) (genui.compounds.views.MolSetExporterViewSet attribute) (genui.compounds.views.MolSetExportViewSet attribute) (genui.compounds.views.MolSetMoleculesView attribute) (genui.compounds.views.MolSetViewSet attribute) (genui.generators.extensions.genuidrugex.views.ClippedViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExAgentViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExNetViewSet attribute) (genui.generators.extensions.genuidrugex.views.EnvironmentViewSet attribute) (genui.generators.extensions.genuidrugex.views.GeneratorViewSet attribute) (genui.generators.extensions.genuidrugex.views.HumpViewSet attribute) (genui.generators.extensions.genuidrugex.views.ModifierViewSet attribute) (genui.generators.extensions.genuidrugex.views.PropertyScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.QSARScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScoringMethodViewSet attribute) (genui.generators.views.GeneratorViewSet attribute) (genui.maps.views.MapViewSet attribute) (genui.maps.views.PointsView attribute) (genui.models.views.AlgorithmViewSet attribute) (genui.models.views.MetricsViewSet attribute) (genui.models.views.ModelFileView attribute) (genui.models.views.ModelPerformanceListView attribute) (genui.projects.views.GenUIProjectViewSet attribute) (genui.qsar.views.DescriptorGroupsViewSet attribute) (genui.qsar.views.QSARModelViewSet attribute)

R

R2 (class in genui.models.genuimodels.metrics) RandomForest (class in genui.models.genuimodels.algorithms) rdMol (genui.compounds.models.ChemicalEntity attribute) (genui.compounds.models.Molecule property) read_only_fields (genui.compounds.extensions.chembl.serializers.ChEMBLSetInitSerializer.Meta attribute) (genui.compounds.extensions.chembl.serializers.ChEMBLSetSerializer.Meta attribute) (genui.compounds.extensions.chembl.serializers.ChEMBLSetUpdateSerializer.Meta attribute) (genui.compounds.extensions.csvimports.serializers.CSVSetSerializer.Meta attribute) (genui.compounds.extensions.csvimports.serializers.CSVSetUpdateSerializer.Meta attribute) (genui.compounds.extensions.fileimports.serializer.FileSetSerializer.Meta attribute) (genui.compounds.extensions.fileimports.serializer.FileSetUpdateSerializer.Meta attribute) (genui.compounds.extensions.generated.serializers.GeneratedSetInitSerializer.Meta attribute) (genui.compounds.extensions.generated.serializers.GeneratedSetSerializer.Meta attribute) (genui.compounds.extensions.generated.serializers.GeneratedSetUpdateSerializer.Meta attribute) (genui.compounds.extensions.sdf.serializers.SDFSetSerializer.Meta attribute) (genui.compounds.extensions.sdf.serializers.SDFSetUpdateSerializer.Meta attribute) (genui.compounds.serializers.ActivitySetSerializer.Meta attribute) (genui.compounds.serializers.ActivityTypeSerializer.Meta attribute) (genui.compounds.serializers.ActivityUnitsSerializer.Meta attribute) (genui.compounds.serializers.GenericMolSetSerializer.Meta attribute) (genui.compounds.serializers.MolSetExportSerializer.Meta attribute) (genui.compounds.serializers.MolSetFileSerializer.Meta attribute) (genui.compounds.serializers.MolSetSerializer.Meta attribute) (genui.compounds.serializers.MolSetUpdateSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.ClippedSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExAgentSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExEnvironmentCalculationSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExEnvironmentSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExNetInitSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExNetSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.DrugExScorerSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.ModifierSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.ModifierTestSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.PropertyScorerSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.QSARScorerSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.ScoringFunctionSerializer.Meta attribute) (genui.generators.extensions.genuidrugex.serializers.SmoothHumpSerializer.Meta attribute) (genui.maps.serializers.MapInitSerializer.Meta attribute) (genui.maps.serializers.MapSerializer.Meta attribute) (genui.models.serializers.ModelFileSerializer.Meta attribute) (genui.models.serializers.ModelParameterSerializer.Meta attribute) (genui.models.serializers.ModelSerializer.Meta attribute) (genui.projects.serializers.ProjectSerializer.Meta attribute) (genui.qsar.serializers.ModelActivitySetSerializer.Meta attribute) (genui.qsar.serializers.QSARModelInitSerializer.Meta attribute) (genui.qsar.serializers.QSARModelSerializer.Meta attribute)

readonly_fields (genui.compounds.admin.ActivitySetAdmin attribute) (genui.compounds.admin.MolSetAdmin attribute) (genui.projects.admin.GenUIProjectAdmin attribute) (genui.qsar.admin.QSARModelAdmin attribute) ready() (genui.compounds.apps.CompoundsConfig method) (genui.generators.apps.GeneratorsConfig method) (genui.models.apps.ModelsConfig method) (genui.projects.apps.ProjectsConfig method) recordProgress() (genui.models.genuimodels.bases.ProgressMixIn method) REDIS_HOST REDIS_PASSWORD REGRESSION (genui.models.genuimodels.bases.Algorithm attribute) relation (genui.compounds.extensions.chembl.models.ChEMBLActivity attribute) release() (in module genui.utils.gpu) retrieve() (genui.compounds.views.MoleculeViewSet method) rewardScheme (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) ROC (class in genui.models.genuimodels.metrics) ROCCurvePoint (class in genui.models.models) roccurvepoint (genui.models.models.ModelPerformance attribute) ROCCurvePoint.DoesNotExist ROCCurvePoint.MultipleObjectsReturned runTask() (in module genui.utils.extensions.tasks.utils)

S

sample() (genui.generators.extensions.genuidrugex.genuimodels.algorithms.DrugExAlgorithm method) (genui.generators.extensions.genuidrugex.genuimodels.builders.DrugExAgentBuilder method) (genui.generators.extensions.genuidrugex.genuimodels.builders.DrugExBuilder method) (genui.generators.extensions.genuidrugex.genuimodels.builders.DrugExNetBuilder method) save() (genui.models.genuimodels.bases.ValidationMetric method) (genui.models.genuimodels.metrics.ROC method) (genui.projects.models.DataSet method) (genui.projects.models.Project method) save_model_checks() (in module genui.models.signals) save_model_file_callback() (in module genui.models.signals) saveActivities() (genui.qsar.genuimodels.bases.QSARModelBuilder method) saveChemSpaceJSON() (genui.maps.models.Map method) saveEpochData() (genui.generators.extensions.genuidrugex.genuimodels.monitors.DrugExMonitor method) saveFile() (genui.compounds.exporters.base.BaseMolSetExporter method) (genui.compounds.extensions.sdf.exporters.SDFExporter method) (genui.models.genuimodels.bases.ModelBuilder method) saveModel() (genui.generators.extensions.genuidrugex.genuimodels.monitors.DrugExMonitor method) saveMolecules() (genui.generators.extensions.genuidrugex.genuimodels.monitors.DrugExMonitor method) saveParameters() (genui.models.serializers.ModelSerializer static method) savePerformance() (genui.generators.extensions.genuidrugex.genuimodels.monitors.DrugExMonitor method) scale() (genui.maps.extensions.engstmaps.genuimodels.algorithms.PCA method) schema (genui.compounds.views.BaseMolSetViewSet attribute) (genui.utils.extensions.tasks.views.ModelTasksView attribute) ScoreModifier (class in genui.generators.extensions.genuidrugex.models) ScoreModifier.DoesNotExist ScoreModifier.MultipleObjectsReturned scoremodifier_ptr (genui.generators.extensions.genuidrugex.models.ClippedScore attribute) (genui.generators.extensions.genuidrugex.models.SmoothHump attribute) scoremodifier_ptr_id (genui.generators.extensions.genuidrugex.models.ClippedScore attribute) (genui.generators.extensions.genuidrugex.models.SmoothHump attribute) scoremodifier_set (genui.projects.models.Project attribute) scorers (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) ScorerViewSet (class in genui.generators.extensions.genuidrugex.views) scores (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) ScoringFunctionSerializer (class in genui.generators.extensions.genuidrugex.serializers) ScoringFunctionSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) ScoringMethod (class in genui.generators.extensions.genuidrugex.models) ScoringMethod.DoesNotExist ScoringMethod.MultipleObjectsReturned scoringmethod_ptr (genui.generators.extensions.genuidrugex.models.GenUIModelScorer attribute) (genui.generators.extensions.genuidrugex.models.PropertyScorer attribute) scoringmethod_ptr_id (genui.generators.extensions.genuidrugex.models.GenUIModelScorer attribute) (genui.generators.extensions.genuidrugex.models.PropertyScorer attribute) scoringmethod_set (genui.projects.models.Project attribute) ScoringMethodViewSet (class in genui.generators.extensions.genuidrugex.views) SDFCompounds (class in genui.compounds.extensions.sdf.models) sdfcompounds (genui.compounds.models.MolSet attribute) SDFCompounds.DoesNotExist SDFCompounds.MultipleObjectsReturned SdfConfig (class in genui.compounds.extensions.sdf.apps) SDFExporter (class in genui.compounds.extensions.sdf.exporters) SDFMolecule (class in genui.compounds.extensions.sdf.models) sdfmolecule (genui.compounds.models.Molecule attribute) SDFMolecule.DoesNotExist SDFMolecule.MultipleObjectsReturned SDFMolSetTestCase (class in genui.compounds.extensions.sdf.tests) SDFParser (class in genui.compounds.extensions.sdf.parser) SDFSetInitializer (class in genui.compounds.extensions.sdf.initializer) SDFSetSerializer (class in genui.compounds.extensions.sdf.serializers) SDFSetSerializer.Meta (class in genui.compounds.extensions.sdf.serializers) SDFSetUpdateSerializer (class in genui.compounds.extensions.sdf.serializers) SDFSetUpdateSerializer.Meta (class in genui.compounds.extensions.sdf.serializers) SDFSetViewSet (class in genui.compounds.extensions.sdf.views) serialize() (genui.models.genuimodels.bases.Algorithm method) serializer_class (genui.compounds.extensions.chembl.views.ChEMBLAssayViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLSetViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLTargetViewSet attribute) (genui.compounds.extensions.csvimports.views.CSVSetViewSet attribute) (genui.compounds.extensions.generated.views.GeneratedSetViewSet attribute) (genui.compounds.extensions.sdf.views.SDFSetViewSet attribute) (genui.compounds.views.ActivitySetViewSet attribute) (genui.compounds.views.MoleculeViewSet attribute) (genui.compounds.views.MolSetExporterViewSet attribute) (genui.compounds.views.MolSetExportViewSet attribute) (genui.compounds.views.MolSetViewSet attribute) (genui.generators.extensions.genuidrugex.views.ClippedViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExAgentViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExNetViewSet attribute) (genui.generators.extensions.genuidrugex.views.EnvironmentViewSet attribute) (genui.generators.extensions.genuidrugex.views.GeneratorViewSet attribute) (genui.generators.extensions.genuidrugex.views.HumpViewSet attribute) (genui.generators.extensions.genuidrugex.views.ModifierViewSet attribute) (genui.generators.extensions.genuidrugex.views.PropertyScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.QSARScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScoringMethodViewSet attribute) (genui.generators.views.GeneratorViewSet attribute) (genui.maps.views.MapViewSet attribute) (genui.maps.views.PointsView attribute) (genui.models.views.AlgorithmViewSet attribute) (genui.models.views.MetricsViewSet attribute) (genui.models.views.ModelFileView attribute) (genui.models.views.ModelPerformanceListView attribute) (genui.projects.views.GenUIProjectViewSet attribute) (genui.qsar.views.DescriptorGroupsViewSet attribute) (genui.qsar.views.QSARModelViewSet attribute)

set_progress() (genui.utils.extensions.tasks.progress.ProgressRecorder method) setUp() (genui.compounds.extensions.chembl.tests.ChEMBLMolSetTestCase method) (genui.compounds.extensions.csvimports.tests.CSVMolSetTestCase method) (genui.compounds.extensions.sdf.tests.SDFMolSetTestCase method) (genui.maps.extensions.engstmaps.tests.MapTestCase method) (genui.maps.tests.MapTestCase method) (genui.projects.tests.ProjectMixIn method) (genui.projects.tests.UserMixIn method) (genui.qsar.tests.QSARModelInit method) setup() (in module genui.accounts.genuisetup) (in module genui.compounds.extensions.chembl.genuisetup) (in module genui.compounds.extensions.csvimports.genuisetup) (in module genui.compounds.extensions.generated.genuisetup) (in module genui.compounds.extensions.sdf.genuisetup) (in module genui.compounds.genuisetup) (in module genui.generators.extensions.genuidrugex.genuisetup) (in module genui.generators.genuisetup) (in module genui.maps.extensions.engstmaps.genuisetup) (in module genui.maps.genuisetup) (in module genui.models.genuisetup) (in module genui.projects.genuisetup) (in module genui.qsar.genuisetup) (in module genui.utils.extensions.tasks.genuisetup) (in module genui.utils.genuisetup) SetUpDrugExGeneratorsMixIn (class in genui.generators.extensions.genuidrugex.tests) sigma (genui.generators.extensions.genuidrugex.models.SmoothHump attribute) smiles (genui.compounds.models.Molecule property) (genui.generators.extensions.genuidrugex.models.DrugExAgentTraining.ExplorerClass attribute) (genui.maps.models.Point property) smiles_molecules (genui.generators.extensions.genuidrugex.models.DrugExAgentTraining.ExplorerClass attribute) smilesCol (genui.compounds.extensions.csvimports.models.CSVCompounds attribute) SMILESErrorRate (class in genui.generators.extensions.genuidrugex.genuimodels.metrics) SMILESParsingError smilesRNNSingle (genui.generators.extensions.genuidrugex.models.DrugExNetTraining.ModelClass attribute) smilesTrans (genui.generators.extensions.genuidrugex.models.DrugExNetTraining.ModelClass attribute) SMILESUniqueRate (class in genui.generators.extensions.genuidrugex.genuimodels.metrics) smooth (genui.generators.extensions.genuidrugex.models.ClippedScore attribute) SmoothHump (class in genui.generators.extensions.genuidrugex.models) smoothhump (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) SmoothHump.DoesNotExist SmoothHump.MultipleObjectsReturned SmoothHumpSerializer (class in genui.generators.extensions.genuidrugex.serializers) SmoothHumpSerializer.Meta (class in genui.generators.extensions.genuidrugex.serializers) source (genui.compounds.extensions.generated.models.GeneratedMolSet attribute) (genui.compounds.models.Activity attribute) source_id (genui.compounds.extensions.generated.models.GeneratedMolSet attribute) (genui.compounds.models.Activity attribute) StandardizationError standardize() (genui.generators.extensions.genuidrugex.models.DrugExNet static method) standardizeFromSMILES() (genui.compounds.initializers.base.MolSetInitializer method) Standardizer (class in genui.compounds.initializers.base) started_only (genui.utils.extensions.tasks.views.ModelTasksView attribute) step (genui.models.models.ModelPerfomanceNN attribute) strategy (genui.models.models.ModelParameterValue attribute) strategy_id (genui.models.models.ModelParameterValue attribute) STRING (genui.models.models.ModelParameter attribute) suffix (genui.compounds.extensions.chembl.views.ChEMBLAssayViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLSetViewSet attribute) (genui.compounds.extensions.chembl.views.ChEMBLTargetViewSet attribute) (genui.compounds.extensions.csvimports.views.CSVSetViewSet attribute) (genui.compounds.extensions.generated.views.GeneratedSetViewSet attribute) (genui.compounds.extensions.sdf.views.SDFSetViewSet attribute) (genui.compounds.views.ActivitySetViewSet attribute) (genui.compounds.views.MoleculeViewSet attribute) (genui.compounds.views.MolSetExporterViewSet attribute) (genui.compounds.views.MolSetExportViewSet attribute) (genui.compounds.views.MolSetViewSet attribute) (genui.generators.extensions.genuidrugex.views.ClippedViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExAgentViewSet attribute) (genui.generators.extensions.genuidrugex.views.DrugExNetViewSet attribute) (genui.generators.extensions.genuidrugex.views.EnvironmentViewSet attribute) (genui.generators.extensions.genuidrugex.views.GeneratorViewSet attribute) (genui.generators.extensions.genuidrugex.views.HumpViewSet attribute) (genui.generators.extensions.genuidrugex.views.ModifierViewSet attribute) (genui.generators.extensions.genuidrugex.views.PropertyScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.QSARScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScorerViewSet attribute) (genui.generators.extensions.genuidrugex.views.ScoringMethodViewSet attribute) (genui.generators.views.GeneratorAlgorithmViewSet attribute) (genui.generators.views.GeneratorMetricsViewSet attribute) (genui.generators.views.GeneratorViewSet attribute) (genui.maps.views.MappingAlgViewSet attribute) (genui.maps.views.MapViewSet attribute) (genui.projects.views.GenUIProjectViewSet attribute) (genui.qsar.views.DescriptorGroupsViewSet attribute) (genui.qsar.views.QSARAlgorithmViewSet attribute) (genui.qsar.views.QSARMetricsViewSet attribute) (genui.qsar.views.QSARModelViewSet attribute) summary() (genui.compounds.views.ActivitySetViewSet method) SVD (class in genui.maps.extensions.engstmaps.genuimodels.algorithms) SVG (genui.compounds.models.PictureFormat attribute)

T

target (genui.compounds.extensions.chembl.models.ChEMBLActivity attribute) target_id (genui.compounds.extensions.chembl.models.ChEMBLActivity attribute) targetID (genui.compounds.extensions.chembl.models.ChEMBLTarget attribute) targets (genui.compounds.extensions.chembl.models.ChEMBLCompounds attribute) TaskProgressInfoSerializer (class in genui.utils.extensions.tasks.serializers) TaskProgressSerializer (class in genui.utils.extensions.tasks.serializers) TaskProgressView (class in genui.utils.extensions.tasks.views) tasks (genui.compounds.extensions.chembl.models.ChEMBLActivities attribute) (genui.compounds.extensions.chembl.models.ChEMBLCompounds attribute) (genui.compounds.extensions.csvimports.models.CSVCompounds attribute) (genui.compounds.extensions.fileimports.model.FileCompounds attribute) (genui.compounds.extensions.generated.models.GeneratedMolSet attribute) (genui.compounds.extensions.sdf.models.SDFCompounds attribute) (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.MolSet attribute) (genui.generators.extensions.genuidrugex.models.DrugEx attribute) (genui.generators.extensions.genuidrugex.models.DrugExAgent attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironmentScores attribute) (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) (genui.generators.models.Generator attribute) (genui.maps.models.Map attribute) (genui.models.models.Model attribute) (genui.qsar.models.ModelActivitySet attribute) (genui.qsar.models.QSARModel attribute) TasksConfig (class in genui.utils.extensions.tasks.apps) TaskSerializer (class in genui.utils.extensions.tasks.serializers) TaskShortcutsMixIn (class in genui.utils.extensions.tasks.models) TasksSerializerFactory (class in genui.utils.extensions.tasks.serializers) TasksSerializerFactory.AutoSchemaMixIn (class in genui.utils.extensions.tasks.serializers) tearDown() (genui.projects.tests.UserMixIn method) test() (genui.generators.extensions.genuidrugex.models.ClippedScore static method) (genui.generators.extensions.genuidrugex.models.ScoreModifier static method) (genui.generators.extensions.genuidrugex.models.SmoothHump static method) (genui.generators.extensions.genuidrugex.views.ModifierViewSet method) test_activity_summary() (genui.compounds.extensions.chembl.tests.ChEMBLMolSetTestCase method) test_all() (genui.generators.extensions.genuidrugex.tests.DrugExGeneratorInitTestCase method) (genui.generators.extensions.genuidrugex.tests.UseDefaultNetTestCase method)

test_create() (genui.compounds.tests.DuplicateEntitiesTest method) test_create_from_files() (genui.generators.extensions.genuidrugex.tests.DrugExFromFileTestCase method) test_create_get_map_correct() (genui.maps.extensions.engstmaps.tests.MapTestCase method) test_create_map() (genui.maps.tests.MapTestCase method) test_create_map_wrong() (genui.maps.extensions.engstmaps.tests.MapTestCase method) test_create_view_classification() (genui.qsar.tests.ModelInitTestCase method) test_create_view_from_file_classification() (genui.qsar.tests.ModelInitTestCase method) test_create_view_regression() (genui.qsar.tests.ModelInitTestCase method) test_csv_create() (genui.compounds.extensions.csvimports.tests.CSVMolSetTestCase method) test_default_generator() (genui.projects.tests.ProjectTestCase method) test_info() (genui.utils.tests.GPUTests method) test_sdf_create() (genui.compounds.extensions.sdf.tests.SDFMolSetTestCase method) test_serializer_class (genui.generators.extensions.genuidrugex.views.ModifierViewSet attribute) threshold (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) to_representation() (genui.utils.serializers.GenericModelSerializerMixIn method) tpr (genui.models.models.ROCCurvePoint property) trainingStrategies (genui.models.models.Model attribute) TrainingStrategy (class in genui.models.models) trainingStrategy (genui.models.models.Model property) TrainingStrategy.DoesNotExist TrainingStrategy.MultipleObjectsReturned trainingstrategy_ptr (genui.generators.extensions.genuidrugex.models.DrugExAgentTraining attribute) (genui.generators.extensions.genuidrugex.models.DrugExNetTraining attribute) (genui.maps.models.MappingStrategy attribute) (genui.qsar.models.QSARTrainingStrategy attribute) trainingstrategy_ptr_id (genui.generators.extensions.genuidrugex.models.DrugExAgentTraining attribute) (genui.generators.extensions.genuidrugex.models.DrugExNetTraining attribute) (genui.maps.models.MappingStrategy attribute) (genui.qsar.models.QSARTrainingStrategy attribute) trainingstrategy_set (genui.models.models.Algorithm attribute) (genui.models.models.AlgorithmMode attribute) TrainingStrategyInitSerializer (class in genui.models.serializers) TrainingStrategyInitSerializer.Meta (class in genui.models.serializers) TrainingStrategySerializer (class in genui.models.serializers) TrainingStrategySerializer.Meta (class in genui.models.serializers) TSNE (class in genui.maps.genuimodels.algorithms) type (genui.compounds.models.Activity attribute) type_id (genui.compounds.models.Activity attribute)

U

UMAP (class in genui.maps.extensions.engstmaps.genuimodels.algorithms) units (genui.compounds.models.Activity attribute) units_id (genui.compounds.models.Activity attribute) UnitsInline (class in genui.qsar.admin) update() (genui.compounds.serializers.MolSetUpdateSerializer method) (genui.compounds.views.BaseMolSetViewSet method) (genui.projects.models.BaseDataSet method) (genui.projects.models.BaseProject method) (genui.projects.models.DataSet method) (genui.projects.models.Project method) updated (genui.compounds.models.ActivitySet attribute) (genui.compounds.models.MolSet attribute) (genui.generators.extensions.genuidrugex.models.DrugExEnvironment attribute) (genui.generators.extensions.genuidrugex.models.DrugExScorer attribute) (genui.generators.extensions.genuidrugex.models.ScoreModifier attribute) (genui.generators.extensions.genuidrugex.models.ScoringMethod attribute) (genui.generators.models.Generator attribute) (genui.models.models.Model attribute) (genui.projects.models.BaseDataSet attribute) (genui.projects.models.BaseProject attribute) (genui.projects.models.DataSet attribute) (genui.projects.models.Project attribute)

updateInstance() (genui.compounds.extensions.chembl.initializers.ChEMBLSetInitializer method) (genui.compounds.extensions.fileimports.initializer.FileInitializer method) (genui.compounds.extensions.generated.initializers.GeneratedSetInitializer method) (genui.compounds.initializers.base.MolSetInitializer method) (genui.compounds.tests.DuplicateEntitiesTest.InitializerWithMultipleEntities method) updater_class (genui.compounds.views.BaseMolSetViewSet attribute) uploadModel() (genui.qsar.tests.QSARModelInit method) upper (genui.generators.extensions.genuidrugex.models.ClippedScore attribute) (genui.generators.extensions.genuidrugex.models.SmoothHump attribute) useBuilder() (genui.models.serializers.ModelSerializer method) UseDefaultNetTestCase (class in genui.generators.extensions.genuidrugex.tests) UserMixIn (class in genui.projects.tests) UtilsConfig (class in genui.utils.apps)

V

validAlgorithms (genui.models.models.ModelPerformanceMetric attribute) validate() (genui.models.genuimodels.bases.ValidationMixIn method) ValidationMetric (class in genui.models.genuimodels.bases) ValidationMixIn (class in genui.models.genuimodels.bases) ValidationSet (class in genui.models.models) ValidationSet.Meta (class in genui.models.models) validationStrategies (genui.models.models.Model attribute) ValidationStrategy (class in genui.models.models) validationStrategy (genui.models.models.Model property) ValidationStrategy.DoesNotExist ValidationStrategy.MultipleObjectsReturned validationstrategy_ptr (genui.generators.extensions.genuidrugex.models.DrugExAgentValidation attribute) (genui.generators.extensions.genuidrugex.models.DrugExNetValidation attribute) (genui.models.models.BasicValidationStrategy attribute) (genui.models.models.CV attribute) (genui.models.models.ValidationSet attribute) validationstrategy_ptr_id (genui.generators.extensions.genuidrugex.models.DrugExAgentValidation attribute) (genui.generators.extensions.genuidrugex.models.DrugExNetValidation attribute) (genui.models.models.BasicValidationStrategy attribute) (genui.models.models.CV attribute) (genui.models.models.ValidationSet attribute)

validationstrategy_set (genui.models.models.ModelPerformanceMetric attribute) ValidationStrategyInitSerializer (class in genui.models.serializers) ValidationStrategyInitSerializer.Meta (class in genui.models.serializers) ValidationStrategySerializer (class in genui.models.serializers) ValidationStrategySerializer.Meta (class in genui.models.serializers) validModes (genui.models.models.Algorithm attribute) (genui.models.models.ModelPerformanceMetric attribute) validSetSize (genui.generators.extensions.genuidrugex.models.DrugExAgentValidation attribute) (genui.generators.extensions.genuidrugex.models.DrugExNetValidation attribute) (genui.models.models.BasicValidationStrategy attribute) (genui.models.models.ValidationSet attribute) value (genui.compounds.models.Activity attribute) (genui.compounds.models.ActivityTypes attribute) (genui.compounds.models.ActivityUnits attribute) (genui.models.models.ModelParameterBool attribute) (genui.models.models.ModelParameterFloat attribute) (genui.models.models.ModelParameterInt attribute) (genui.models.models.ModelParameterStr attribute) (genui.models.models.ModelPerformance attribute) VOC_FILE_NOTE (genui.generators.extensions.genuidrugex.models.DrugExNet attribute) vocFile (genui.generators.extensions.genuidrugex.models.DrugExNet property)

W

weightedSum (genui.generators.extensions.genuidrugex.models.DrugExEnvironment.RewardScheme attribute)

X

x (genui.maps.models.Point attribute)

Y

y (genui.maps.models.Point attribute)