genui.compounds.extensions package

Subpackages

• genui.compounds.extensions.chembl package
  • Subpackages
    • genui.compounds.extensions.chembl.migrations package
      • Submodules
      • genui.compounds.extensions.chembl.migrations.0001_initial module
      • Module contents
  • Submodules
  • genui.compounds.extensions.chembl.admin module
    • ChEMBLActivitiesAdmin
      • ChEMBLActivitiesAdmin.media
    • ChEMBLCompoundsAdmin
      • ChEMBLCompoundsAdmin.media
  • genui.compounds.extensions.chembl.apps module
    • ChemblConfig
      • ChemblConfig.name
  • genui.compounds.extensions.chembl.genuisetup module
    • setup()
  • genui.compounds.extensions.chembl.initializers module
    • ChEMBLSetInitializer
      • ChEMBLSetInitializer.createMolecule()
      • ChEMBLSetInitializer.initActivities()
      • ChEMBLSetInitializer.populateInstance()
      • ChEMBLSetInitializer.updateInstance()
  • genui.compounds.extensions.chembl.models module
    • ChEMBLActivities
      • ChEMBLActivities.ChEMBLActivitySetSummary
      • ChEMBLActivities.DoesNotExist
      • ChEMBLActivities.MultipleObjectsReturned
      • ChEMBLActivities.activityset_ptr
      • ChEMBLActivities.activityset_ptr_id
      • ChEMBLActivities.cleanForModelling()
      • ChEMBLActivities.getSummary()
      • ChEMBLActivities.polymorphic_primary_key_name
      • ChEMBLActivities.polymorphic_super_sub_accessors_replaced
      • ChEMBLActivities.tasks
    • ChEMBLActivity
      • ChEMBLActivity.DoesNotExist
      • ChEMBLActivity.MultipleObjectsReturned
      • ChEMBLActivity.activity_ptr
      • ChEMBLActivity.activity_ptr_id
      • ChEMBLActivity.assay
      • ChEMBLActivity.assay_id
      • ChEMBLActivity.comment
      • ChEMBLActivity.polymorphic_primary_key_name
      • ChEMBLActivity.polymorphic_super_sub_accessors_replaced
      • ChEMBLActivity.relation
      • ChEMBLActivity.target
      • ChEMBLActivity.target_id
    • ChEMBLAssay
      • ChEMBLAssay.DoesNotExist
      • ChEMBLAssay.MultipleObjectsReturned
      • ChEMBLAssay.assayID
      • ChEMBLAssay.chemblactivity_set
      • ChEMBLAssay.id
      • ChEMBLAssay.objects
    • ChEMBLCompounds
      • ChEMBLCompounds.DoesNotExist
      • ChEMBLCompounds.MultipleObjectsReturned
      • ChEMBLCompounds.molset_ptr
      • ChEMBLCompounds.molset_ptr_id
      • ChEMBLCompounds.polymorphic_primary_key_name
      • ChEMBLCompounds.polymorphic_super_sub_accessors_replaced
      • ChEMBLCompounds.targets
      • ChEMBLCompounds.tasks
    • ChEMBLMolecule
      • ChEMBLMolecule.DoesNotExist
      • ChEMBLMolecule.MultipleObjectsReturned
      • ChEMBLMolecule.chemblID
      • ChEMBLMolecule.molecule_ptr
      • ChEMBLMolecule.molecule_ptr_id
      • ChEMBLMolecule.polymorphic_primary_key_name
      • ChEMBLMolecule.polymorphic_super_sub_accessors_replaced
    • ChEMBLTarget
      • ChEMBLTarget.DoesNotExist
      • ChEMBLTarget.MultipleObjectsReturned
      • ChEMBLTarget.chemblactivity_set
      • ChEMBLTarget.chemblcompounds_set
      • ChEMBLTarget.id
      • ChEMBLTarget.objects
      • ChEMBLTarget.targetID
  • genui.compounds.extensions.chembl.serializers module
    • ChEMBLAssaySerializer
      • ChEMBLAssaySerializer.Meta
    • ChEMBLSetInitSerializer
      • ChEMBLSetInitSerializer.Meta
      • ChEMBLSetInitSerializer.create()
    • ChEMBLSetSerializer
      • ChEMBLSetSerializer.Meta
    • ChEMBLSetUpdateSerializer
      • ChEMBLSetUpdateSerializer.Meta
    • ChEMBLTargetSerializer
      • ChEMBLTargetSerializer.Meta
  • genui.compounds.extensions.chembl.tests module
    • ChEMBLMolSetTestCase
      • ChEMBLMolSetTestCase.setUp()
      • ChEMBLMolSetTestCase.test_activity_summary()
  • genui.compounds.extensions.chembl.urls module
  • genui.compounds.extensions.chembl.views module
    • ChEMBLAssayViewSet
      • ChEMBLAssayViewSet.basename
      • ChEMBLAssayViewSet.description
      • ChEMBLAssayViewSet.detail
      • ChEMBLAssayViewSet.name
      • ChEMBLAssayViewSet.queryset
      • ChEMBLAssayViewSet.serializer_class
      • ChEMBLAssayViewSet.suffix
    • ChEMBLSetViewSet
      • ChEMBLSetViewSet.basename
      • ChEMBLSetViewSet.description
      • ChEMBLSetViewSet.detail
      • ChEMBLSetViewSet.get_initializer_additional_arguments()
      • ChEMBLSetViewSet.get_serializer_class()
      • ChEMBLSetViewSet.initializer_class
      • ChEMBLSetViewSet.name
      • ChEMBLSetViewSet.queryset
      • ChEMBLSetViewSet.serializer_class
      • ChEMBLSetViewSet.suffix
    • ChEMBLTargetViewSet
      • ChEMBLTargetViewSet.basename
      • ChEMBLTargetViewSet.description
      • ChEMBLTargetViewSet.detail
      • ChEMBLTargetViewSet.name
      • ChEMBLTargetViewSet.queryset
      • ChEMBLTargetViewSet.serializer_class
      • ChEMBLTargetViewSet.suffix
  • Module contents
• genui.compounds.extensions.csvimports package
  • Subpackages
    • genui.compounds.extensions.csvimports.migrations package
      • Submodules
      • genui.compounds.extensions.csvimports.migrations.0001_initial module
      • genui.compounds.extensions.csvimports.migrations.0002_auto_20200716_1251 module
      • genui.compounds.extensions.csvimports.migrations.0003_auto_20200716_1340 module
      • Module contents
  • Submodules
  • genui.compounds.extensions.csvimports.admin module
  • genui.compounds.extensions.csvimports.apps module
    • CsvimportsConfig
      • CsvimportsConfig.name
  • genui.compounds.extensions.csvimports.genuisetup module
    • setup()
  • genui.compounds.extensions.csvimports.initializer module
    • CSVParsingError
    • CSVSetInitializer
      • CSVSetInitializer.parserCallback()
      • CSVSetInitializer.populateInstance()
  • genui.compounds.extensions.csvimports.models module
    • CSVCompounds
      • CSVCompounds.DoesNotExist
      • CSVCompounds.MultipleObjectsReturned
      • CSVCompounds.activityCol
      • CSVCompounds.activityTypeCol
      • CSVCompounds.activityUnitsCol
      • CSVCompounds.colSeparator
      • CSVCompounds.emptyValue
      • CSVCompounds.molset_ptr
      • CSVCompounds.molset_ptr_id
      • CSVCompounds.nameCol
      • CSVCompounds.polymorphic_primary_key_name
      • CSVCompounds.polymorphic_super_sub_accessors_replaced
      • CSVCompounds.smilesCol
      • CSVCompounds.tasks
    • CSVMolecule
      • CSVMolecule.DoesNotExist
      • CSVMolecule.MultipleObjectsReturned
      • CSVMolecule.molecule_ptr
      • CSVMolecule.molecule_ptr_id
      • CSVMolecule.name
      • CSVMolecule.polymorphic_primary_key_name
      • CSVMolecule.polymorphic_super_sub_accessors_replaced
  • genui.compounds.extensions.csvimports.parser module
    • CSVParser
      • CSVParser.parse()
      • CSVParser.processRow()
  • genui.compounds.extensions.csvimports.serializers module
    • CSVSetSerializer
      • CSVSetSerializer.Meta
    • CSVSetUpdateSerializer
      • CSVSetUpdateSerializer.Meta
  • genui.compounds.extensions.csvimports.tests module
    • CSVMolSetTestCase
      • CSVMolSetTestCase.setUp()
      • CSVMolSetTestCase.test_csv_create()
  • genui.compounds.extensions.csvimports.urls module
  • genui.compounds.extensions.csvimports.views module
    • CSVSetViewSet
      • CSVSetViewSet.basename
      • CSVSetViewSet.description
      • CSVSetViewSet.detail
      • CSVSetViewSet.get_initializer_additional_arguments()
      • CSVSetViewSet.get_serializer_class()
      • CSVSetViewSet.initializer_class
      • CSVSetViewSet.name
      • CSVSetViewSet.parser_classes
      • CSVSetViewSet.queryset
      • CSVSetViewSet.serializer_class
      • CSVSetViewSet.suffix
  • Module contents
• genui.compounds.extensions.fileimports package
  • Submodules
  • genui.compounds.extensions.fileimports.initializer module
    • FileInitializer
      • FileInitializer.parseMols()
      • FileInitializer.populateInstance()
      • FileInitializer.updateInstance()
    • InvalidParserException
  • genui.compounds.extensions.fileimports.model module
    • FileCompounds
      • FileCompounds.Meta
      • FileCompounds.file
      • FileCompounds.molset_ptr
      • FileCompounds.molset_ptr_id
      • FileCompounds.polymorphic_primary_key_name
      • FileCompounds.polymorphic_super_sub_accessors_replaced
      • FileCompounds.tasks
  • genui.compounds.extensions.fileimports.parser module
    • FileParser
      • FileParser.parse()
  • genui.compounds.extensions.fileimports.serializer module
    • FileSetSerializer
      • FileSetSerializer.Meta
      • FileSetSerializer.create()
    • FileSetUpdateSerializer
      • FileSetUpdateSerializer.Meta
  • Module contents
• genui.compounds.extensions.generated package
  • Subpackages
    • genui.compounds.extensions.generated.migrations package
      • Submodules
      • genui.compounds.extensions.generated.migrations.0001_initial module
      • Module contents
  • Submodules
  • genui.compounds.extensions.generated.admin module
    • ChEMBLCompoundsAdmin
      • ChEMBLCompoundsAdmin.media
  • genui.compounds.extensions.generated.apps module
    • GeneratedConfig
      • GeneratedConfig.name
  • genui.compounds.extensions.generated.genuisetup module
    • setup()
  • genui.compounds.extensions.generated.initializers module
    • GeneratedSetInitializer
      • GeneratedSetInitializer.populateInstance()
      • GeneratedSetInitializer.updateInstance()
  • genui.compounds.extensions.generated.models module
    • GeneratedMolSet
      • GeneratedMolSet.DoesNotExist
      • GeneratedMolSet.MultipleObjectsReturned
      • GeneratedMolSet.molset_ptr
      • GeneratedMolSet.molset_ptr_id
      • GeneratedMolSet.polymorphic_primary_key_name
      • GeneratedMolSet.polymorphic_super_sub_accessors_replaced
      • GeneratedMolSet.source
      • GeneratedMolSet.source_id
      • GeneratedMolSet.tasks
  • genui.compounds.extensions.generated.serializers module
    • GeneratedSetInitSerializer
      • GeneratedSetInitSerializer.Meta
      • GeneratedSetInitSerializer.create()
    • GeneratedSetSerializer
      • GeneratedSetSerializer.Meta
    • GeneratedSetUpdateSerializer
      • GeneratedSetUpdateSerializer.Meta
  • genui.compounds.extensions.generated.tests module
  • genui.compounds.extensions.generated.urls module
  • genui.compounds.extensions.generated.views module
    • GeneratedSetViewSet
      • GeneratedSetViewSet.basename
      • GeneratedSetViewSet.description
      • GeneratedSetViewSet.detail
      • GeneratedSetViewSet.get_initializer_additional_arguments()
      • GeneratedSetViewSet.get_serializer_class()
      • GeneratedSetViewSet.gpu_support
      • GeneratedSetViewSet.initializer_class
      • GeneratedSetViewSet.name
      • GeneratedSetViewSet.queryset
      • GeneratedSetViewSet.serializer_class
      • GeneratedSetViewSet.suffix
  • Module contents
• genui.compounds.extensions.sdf package
  • Subpackages
    • genui.compounds.extensions.sdf.migrations package
      • Submodules
      • genui.compounds.extensions.sdf.migrations.0001_initial module
      • genui.compounds.extensions.sdf.migrations.0002_auto_20200713_1449 module
      • genui.compounds.extensions.sdf.migrations.0003_auto_20200713_1501 module
      • Module contents
  • Submodules
  • genui.compounds.extensions.sdf.admin module
  • genui.compounds.extensions.sdf.apps module
    • SdfConfig
      • SdfConfig.name
  • genui.compounds.extensions.sdf.exporters module
    • SDFExporter
      • SDFExporter.name
      • SDFExporter.saveFile()
  • genui.compounds.extensions.sdf.genuisetup module
    • setup()
  • genui.compounds.extensions.sdf.initializer module
    • SDFSetInitializer
      • SDFSetInitializer.parserCallback()
      • SDFSetInitializer.populateInstance()
  • genui.compounds.extensions.sdf.models module
    • SDFCompounds
      • SDFCompounds.DoesNotExist
      • SDFCompounds.MultipleObjectsReturned
      • SDFCompounds.activitiesProp
      • SDFCompounds.activityTypesProp
      • SDFCompounds.activityUnitsProp
      • SDFCompounds.dataSeparator
      • SDFCompounds.molset_ptr
      • SDFCompounds.molset_ptr_id
      • SDFCompounds.polymorphic_primary_key_name
      • SDFCompounds.polymorphic_super_sub_accessors_replaced
      • SDFCompounds.tasks
    • SDFMolecule
      • SDFMolecule.DoesNotExist
      • SDFMolecule.MultipleObjectsReturned
      • SDFMolecule.molecule_ptr
      • SDFMolecule.molecule_ptr_id
      • SDFMolecule.name
      • SDFMolecule.polymorphic_primary_key_name
      • SDFMolecule.polymorphic_super_sub_accessors_replaced
  • genui.compounds.extensions.sdf.parser module
    • SDFParser
      • SDFParser.parse()
  • genui.compounds.extensions.sdf.serializers module
    • SDFSetSerializer
      • SDFSetSerializer.Meta
    • SDFSetUpdateSerializer
      • SDFSetUpdateSerializer.Meta
  • genui.compounds.extensions.sdf.tests module
    • SDFMolSetTestCase
      • SDFMolSetTestCase.setUp()
      • SDFMolSetTestCase.test_sdf_create()
  • genui.compounds.extensions.sdf.urls module
  • genui.compounds.extensions.sdf.views module
    • SDFSetViewSet
      • SDFSetViewSet.basename
      • SDFSetViewSet.description
      • SDFSetViewSet.detail
      • SDFSetViewSet.get_initializer_additional_arguments()
      • SDFSetViewSet.get_serializer_class()
      • SDFSetViewSet.initializer_class
      • SDFSetViewSet.name
      • SDFSetViewSet.parser_classes
      • SDFSetViewSet.queryset
      • SDFSetViewSet.serializer_class
      • SDFSetViewSet.suffix
  • Module contents

Module contents

__init__.py

Created by: Martin Sicho On: 4/27/20, 8:06 PM